PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00340.20
Common NameJCGZ_06429, LOC105650386
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 260aa    MW: 29142 Da    PI: 8.031
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00340.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19181215135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Jcr4S00340.20 181 CQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRL 215
                    *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-15175225IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.215175211IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-14177238No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14179213IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.22E-14180227No hitNo description
PfamPF003204.1E-17181215IPR000679Zinc finger, GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MESLDPAACF MDDLLDFASD IGEEDDDEEH NKPRKALPTL NPNGLHPAPF DVLDHPDDST  60
HPLPEFAEEE LEWLSNKDAF PAVETFVDII SENPGSLPKQ RSPVSVLENS TTSSTSISGN  120
SSTNGSVIMN YCRSLQVPVK ARSKHHRRRR RDLQAHQCWW NQENLKKVRP PVTSSTMGRK  180
CQHCGAEKTP QWRAGPLGPK TLCNACGVRF KSGRLVPEYR PASSPSFCSK MHSNSHRKVL  240
EMRKQKQMMG LVVVKPMEKG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092669.10.0GATA transcription factor 1
SwissprotQ8LAU91e-55GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A067JC770.0A0A067JC77_JATCU; Uncharacterized protein
STRINGcassava4.1_014105m1e-134(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.17e-57GATA transcription factor 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]