PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00331.80

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Nin-like

Protein Properties

Length: 807aa MW: 91276.6 Da PI: 6.3561

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00331.80	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.5e-29	518	569	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Jcr4S00331.80 518 AEKTISLQILRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 569 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.824	508	589	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-24	521	569	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.6E-19	719	800	No hit	No description
PROSITE profile	PS51745	20.208	719	802	IPR000270	PB1 domain
SMART	SM00666	2.0E-19	719	802	IPR000270	PB1 domain
Pfam	PF00564	4.5E-14	720	799	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-20	720	799	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence Send to blast
MDRGASALIN STFSSTSVDL DFIDKPFAHG SWLRTTDKVN FLESAPFISS VQYLDSYHQF 60 SRKEMENLFD NPTPVYSGIG KCVVETDTCL VQSQGEESRT RKFLIEPYCS VKDRLTLAID 120 YLKEYVEHRD VLIQIWVPTK IAGQNVLTAT DLPYSLNPSC WSLESYRNIS KAFHLTAEDS 180 KESAGLPGRV SWKSFLNGLL IGCLALPVFE QESGTCLAVV EIVTTTQKIN YHLELEIVCK 240 ALEAVDLKSS QDFFPFCIKT CNEFYQIAIP EISKILKSVC ETNNLPLALT WALCNRQGKN 300 EYEQVSGKYD YYISTVDSAC YMADSDLFGF YKACSTQYLF LDQGIVGKAF TRNKQLFATD 360 VTSFSKTSYP LSHHARMFNL RAALAIPLAN IYTGSIEFVL EIFLPRDCQD IEEQKHMWDF 420 LPIVIQHSCR NFHVIMDKEK ENFAFVSWEC LKEEPEEEFK VISHWDNNES EFSEFEQLQE 480 SSALKFGVVD ESKENSSVGI DFSLSKNLRA GEKRQTKAEK TISLQILRQY FAGSLKDAAK 540 SIGVCPTTLK RICRQHGINR WPSRKIKKVN HSLKKLQLVV NSIRGAEGLI RIDSFYNTFP 600 GLNSQGNDHF PSFKTNNNSQ KLNSQPDSGL LSLKVADSNS QSPSGSQNSG SSICCSTKAK 660 QLTSTTTNGL NTAFSLAVEV PVVTLNRSCS KAELLSPNHD KIQETIPKVT GQSFRDGMIF 720 RVKATFGLEN IRFSFQPNWA FKDLQQEIAK RFKIYDFSKI DLKYLDIDQE SVLLTCDDDL 780 DECLDLLRFS QTNTLKISLY QSSQPKI

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence Send to blast

MDRGASALIN STFSSTSVDL DFIDKPFAHG SWLRTTDKVN FLESAPFISS VQYLDSYHQF  60
SRKEMENLFD NPTPVYSGIG KCVVETDTCL VQSQGEESRT RKFLIEPYCS VKDRLTLAID  120
YLKEYVEHRD VLIQIWVPTK IAGQNVLTAT DLPYSLNPSC WSLESYRNIS KAFHLTAEDS  180
KESAGLPGRV SWKSFLNGLL IGCLALPVFE QESGTCLAVV EIVTTTQKIN YHLELEIVCK  240
ALEAVDLKSS QDFFPFCIKT CNEFYQIAIP EISKILKSVC ETNNLPLALT WALCNRQGKN  300
EYEQVSGKYD YYISTVDSAC YMADSDLFGF YKACSTQYLF LDQGIVGKAF TRNKQLFATD  360
VTSFSKTSYP LSHHARMFNL RAALAIPLAN IYTGSIEFVL EIFLPRDCQD IEEQKHMWDF  420
LPIVIQHSCR NFHVIMDKEK ENFAFVSWEC LKEEPEEEFK VISHWDNNES EFSEFEQLQE  480
SSALKFGVVD ESKENSSVGI DFSLSKNLRA GEKRQTKAEK TISLQILRQY FAGSLKDAAK  540
SIGVCPTTLK RICRQHGINR WPSRKIKKVN HSLKKLQLVV NSIRGAEGLI RIDSFYNTFP  600
GLNSQGNDHF PSFKTNNNSQ KLNSQPDSGL LSLKVADSNS QSPSGSQNSG SSICCSTKAK  660
QLTSTTTNGL NTAFSLAVEV PVVTLNRSCS KAELLSPNHD KIQETIPKVT GQSFRDGMIF  720
RVKATFGLEN IRFSFQPNWA FKDLQQEIAK RFKIYDFSKI DLKYLDIDQE SVLLTCDDDL  780
DECLDLLRFS QTNTLKISLY QSSQPKI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020532393.1	0.0	protein NLP2-like
TrEMBL	A0A067LB88	0.0	A0A067LB88_JATCU; Uncharacterized protein
STRING	XP_002532423.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-176	Nin-like family protein