PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00304.10
Common NameJCGZ_11418, LOC105640320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 323aa    MW: 36432.7 Da    PI: 6.2504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00304.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
    Jcr4S00304.10 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP

2Myb_DNA-binding47.25e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++
    Jcr4S00304.10  67 RGMFSQQEEDLIIRLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.981961IPR017930Myb domain
SuperFamilySSF466894.12E-2912108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002498.6E-151461IPR001005SANT/Myb domain
CDDcd001678.91E-111761No hitNo description
PROSITE profilePS5129424.65862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007177.0E-1466114IPR001005SANT/Myb domain
PfamPF002494.2E-1467111IPR001005SANT/Myb domain
CDDcd001671.36E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIR LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLLKQG  120
IDPSTHKPLS EVVVQEVKEE KNCIDKASLQ IPVHSSFATQ EPTFLINETA TYYSSNDNGL  180
TETCSSREQF NINKQAYDPL SYFDFPANGM GATDFSDNSV SGLSCMFLSE AKENSSNSSN  240
ICNYTAGYNQ MNSNAGFSWD ADNKIESSTF QFPVNGNKTE ELKLSPWQEG SIHTQNSVDF  300
SSYPLTSLSE DLTGANFGAF HQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346590.0KM034659.1 Jatropha curcas clone JcMYB039 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079993.10.0transcription repressor MYB6
TrEMBLA0A067K4I20.0A0A067K4I2_JATCU; MYB family protein
STRINGcassava4.1_033233m1e-164(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-82myb domain protein 86
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]