PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00296.40
Common NameJCGZ_04477, LOC105633841
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bZIP
Protein Properties Length: 123aa    MW: 14196.9 Da    PI: 5.0893
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00296.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.74.5e-121531062
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                   +q+NRe+ArrsRqRK++ ++ L   v +L + N +    ++  +++  ++++e
  Jcr4S00296.40  1 MQSNRESARRSRQRKQKHLDDLMSLVSQLRKDNNQILTSINITTQHFLNVEAE 53
                   79*******************************99998888777776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579591.2E-9148No hitNo description
PROSITE profilePS502178.657157IPR004827Basic-leucine zipper domain
SMARTSM003383.9E-8156IPR004827Basic-leucine zipper domain
PfamPF001702.9E-9141IPR004827Basic-leucine zipper domain
CDDcd147021.65E-15147No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-8371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MQSNRESARR SRQRKQKHLD DLMSLVSQLR KDNNQILTSI NITTQHFLNV EAENSVLRAQ  60
MVELSQRLDS LNEILNYINT SNGIFENDQD LQTNTAASDA FINPLNLIYL NQPIMASPDL  120
FQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1814RRSRQRK
2815RRSRQRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071923.13e-84bZIP transcription factor 11
SwissprotC0Z2L51e-39BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A067KQY27e-83A0A067KQY2_JATCU; Uncharacterized protein
STRINGXP_002510435.17e-64(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-42basic leucine-zipper 44
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]