PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00285.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 396aa    MW: 44665.7 Da    PI: 4.7639
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00285.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.45.1e-1580122850
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF   8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                     +  +f kR  ++ KKA+E+ +LCd+ v+++ f+++g + +++
  Jcr4S00285.30  80 IKAASFLKRSPTLQKKAQEIQTLCDISVCLVCFGPDGSVNTFP 122
                    56789*************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-41124IPR002100Transcription factor, MADS-box
PfamPF003193.1E-1277121IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-1377142IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.03177125IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MLREKHRISW SQMERKYSPK DFLHFRHYCN ANPPISTASP SLPCYCVCIL QVQSPMAPSK  60
TKEPRKANFL KKVRDGNEKI KAASFLKRSP TLQKKAQEIQ TLCDISVCLV CFGPDGSVNT  120
FPEQESEVKA AILSYKGLEK NQRQELTFLE FLEAKKKSLL KKKAKVIRKK MVEVIEKYSK  180
LVDGLYGKNL FEMVNFLEFK LMGFKEVLKS FDTTVKIGDE KVQEQALAIE AVDSDDELGI  240
LENLDIISEN SNQVAVDGTE MITDVSFVES NSWPLDLHSL SNNDSMDENW AQDCKISEFN  300
SNGILETNNG RTRVEVSQSS LWFEGVDNFI FSTNAQESSS LWFEGVDYID TNPKAQDSFG  360
GAMGEIDGMS IVPVSSDDDL LYNVLPISTW DVSFIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081937.10.0uncharacterized protein LOC105641898
TrEMBLA0A067KB740.0A0A067KB74_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616059
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-13AGAMOUS-like 103