PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00285.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 396aa MW: 44665.7 Da PI: 4.7639 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.4 | 5.1e-15 | 80 | 122 | 8 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + +f kR ++ KKA+E+ +LCd+ v+++ f+++g + +++ Jcr4S00285.30 80 IKAASFLKRSPTLQKKAQEIQTLCDISVCLVCFGPDGSVNTFP 122 56789*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-4 | 1 | 124 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-12 | 77 | 121 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-13 | 77 | 142 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.031 | 77 | 125 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MLREKHRISW SQMERKYSPK DFLHFRHYCN ANPPISTASP SLPCYCVCIL QVQSPMAPSK 60 TKEPRKANFL KKVRDGNEKI KAASFLKRSP TLQKKAQEIQ TLCDISVCLV CFGPDGSVNT 120 FPEQESEVKA AILSYKGLEK NQRQELTFLE FLEAKKKSLL KKKAKVIRKK MVEVIEKYSK 180 LVDGLYGKNL FEMVNFLEFK LMGFKEVLKS FDTTVKIGDE KVQEQALAIE AVDSDDELGI 240 LENLDIISEN SNQVAVDGTE MITDVSFVES NSWPLDLHSL SNNDSMDENW AQDCKISEFN 300 SNGILETNNG RTRVEVSQSS LWFEGVDNFI FSTNAQESSS LWFEGVDYID TNPKAQDSFG 360 GAMGEIDGMS IVPVSSDDDL LYNVLPISTW DVSFIG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012081937.1 | 0.0 | uncharacterized protein LOC105641898 | ||||
TrEMBL | A0A067KB74 | 0.0 | A0A067KB74_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16160 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 3e-13 | AGAMOUS-like 103 |