PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00270.20
Common NameJCGZ_06660, LOC105635241
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 417aa    MW: 47287.7 Da    PI: 8.049
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00270.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.6e-17147196155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Jcr4S00270.20 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAFSAARAYDRAAIKFRG 196
                    78*******************......55************************997 PP
2AP237.94.3e-12239289155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+++k  grW+A+   +   g +k+ +lg f+++ eAa+a++ a+ k +g
  Jcr4S00270.20 239 SRYRGVTRHK-CGRWEARMGQF--HG-KKYNYLGLFDSEAEAARAYDMAAIKCNG 289
                    79*****999.7******6663..33.6**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-9147196IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-15147205IPR016177DNA-binding domain
PROSITE profilePS5103217.201148204IPR001471AP2/ERF domain
SMARTSM003806.9E-31148210IPR001471AP2/ERF domain
CDDcd000183.14E-23148206No hitNo description
Gene3DG3DSA:3.30.730.105.6E-17148205IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16239298IPR016177DNA-binding domain
PfamPF008477.1E-9239289IPR001471AP2/ERF domain
CDDcd000181.40E-24239299No hitNo description
PROSITE profilePS5103216.463240297IPR001471AP2/ERF domain
SMARTSM003805.1E-30240303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15240297IPR001471AP2/ERF domain
PRINTSPR003671.7E-6241252IPR001471AP2/ERF domain
PRINTSPR003671.7E-6279299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLDLNLDIIS TDSSSCDISK NNKNMEVTET SNKTVQMEED STNSSSIIIN TVPEDENSSN  60
NYTAFIFDIL KKEKVDDNKN LIDFTTHQLF PEKSGLELDL QPGLSMVRPQ WLKLSQMEPS  120
GEAELRIVQQ KQQQMRKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
FSAARAYDRA AIKFRGVDAD INFNLSDYEE DIKQMKNLSK EEFIHILRRQ STGFARGSSR  240
YRGVTRHKCG RWEARMGQFH GKKYNYLGLF DSEAEAARAY DMAAIKCNGR EAVTNFEPSV  300
YDGEPIFDLS SEGNGHNLDL SLGTSAPTNN NNVRDCNFLC TDHKLPNKDR LKGRSTASCT  360
PKGSASLSMP SKFLPTLSSL LPSNQERVTE KSIVEAKTSI WQWQNNNENN KNNNNVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073670.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
TrEMBLA0A067LNU70.0A0A067LNU7_JATCU; Uncharacterized protein
STRINGPOPTR_0008s04490.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-83AP2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]