PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00247.70
Common NameJCGZ_07730, LOC105638209
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 371aa    MW: 40749.9 Da    PI: 6.0436
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00247.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17262296135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Jcr4S00247.70 262 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 296
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-7718352IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.334256292IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-17256306IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-14258293IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.09E-15258320No hitNo description
CDDcd002029.64E-14261308No hitNo description
PROSITE patternPS003440262287IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15262296IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEAPEFYNQN GFCSPFSNEK HHSLDSKPTG GGGGDHFIVE DLLDFSNEDA VITDGGVAFD  60
NVTGNSTDSS SVTVVDSCNS SSFSGCEPCF NGGDIGSRNL ADVQFSSDLC VPYDDLAELE  120
WLSNFVEESF SSEDLQKLQL ISGIKARPDE SSETRNFQPD CNGNDNTNNN NNNDVVAINN  180
NNNPIFHPEM SVPAKARSKR SRAAPCNWAS RLLVLSPTTT SPEPEIIVGP TTQHPSSGKK  240
TIKGTGPKRR DGGDGNGDGR KCLHCATDKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY  300
RPAASPTFVL TKHSNSHRKV LELRRQKELL RAQQQQQQQF LHHHQNMVFD VSNGDDYLIH  360
QHVGPDFRQL I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077373.10.0GATA transcription factor 12
SwissprotP697812e-96GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A067KQS30.0A0A067KQS3_JATCU; GATA transcription factor
STRINGcassava4.1_010069m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-75GATA transcription factor 12
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]