PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00244.90
Common NameJCGZ_03440, LOC105632304
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 302aa    MW: 34041.2 Da    PI: 6.7729
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00244.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-19138192256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Jcr4S00244.90 138 RKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKQLGLRPRQVEVWFQNRRARTK 192
                    788899***********************************************98 PP
2HD-ZIP_I/II130.56.6e-42138227191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rlsk+q+++LEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Jcr4S00244.90 138 RKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 227
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.3E-341112IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466896.68E-19129195IPR009057Homeodomain-like
PROSITE profilePS5007117.459134194IPR001356Homeobox domain
SMARTSM003891.0E-16136198IPR001356Homeobox domain
PfamPF000461.2E-16138192IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-19138192IPR009057Homeodomain-like
CDDcd000862.24E-16138195No hitNo description
PRINTSPR000311.5E-5165174IPR000047Helix-turn-helix motif
PROSITE patternPS000270169192IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5174190IPR000047Helix-turn-helix motif
CDDcd146860.0067187226No hitNo description
SMARTSM003404.2E-27194237IPR003106Leucine zipper, homeobox-associated
PfamPF021832.3E-11194228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVEKEDLGLS LSLSFTQNYH SLQLNLVPNS SSSGFNPQKP SWNETFLSSE PFLTDLFLAD  60
PNSDSCRADT RSFLRGIDVN RLPSTADCEE EAGVSSPNST ISSVSGKRSE REGNGDEREM  120
ERDCSRGISD EEDGDTSRKK LRLSKDQSAI LEESFKEHNT LNPKQKMALA KQLGLRPRQV  180
EVWFQNRRAR TKLKQTEVDC EFLKRCCENL TEENRRLQKE VQELRALKLS PQFYMQMTPP  240
TTLTMCPSCE RVAVPPSASS TVDPRSHPQM AHNHHRPIPI NPWAPAVGPI TPGPFDALRP  300
RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142SRKKLRL
2186194RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070041.10.0homeobox-leucine zipper protein HAT4
SwissprotP466011e-121HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A067L7240.0A0A067L724_JATCU; Uncharacterized protein
STRINGcassava4.1_013177m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-119homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]