PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00243.30 | ||||||||
Common Name | JCGZ_25189, LOC105629120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | Trihelix | ||||||||
Protein Properties | Length: 445aa MW: 51016.7 Da PI: 6.6809 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.2 | 7.2e-26 | 121 | 215 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e++ +++ +kk++W++vsk+m+erg ++sp+qC++k+++lnkrykk++++ +++ +++++++ ++++ Jcr4S00243.30 121 KWTDKMVRLLITAVSYIGEDVTSDCgggmrrkfavlQKKGKWKSVSKVMAERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLE 215 7*********************99889999999999**********************************************5588888877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.2E-23 | 119 | 243 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MEGNLSQGSM IPGVAPFGGL DLQGSMRVHH QAQHQHALHH QQHPLHRQGS SAHSSIQEGF 60 PLTMGTLHNS DQNISVSDYN KGDKGKNSAS DEDEPSYTED GADGHNDASR GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED VTSDCGGGMR RKFAVLQKKG KWKSVSKVMA ERGHHVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLEYIDLS EKEKEDVRKI LSSKHLFYEE 240 MCSYHNANRL HLPHDPALQR SLQLALRSKD DHDSDDLRRH QHDDLDEDDQ EAETDDHDEF 300 EENHPSRGDS KGFYGALGGS MKRLRPGLGH EDACFGNSSQ DGNKGSYSHV QIPQVDMNQI 360 SPESSRAAWL QKQWMESRSL QLEEQKVQIQ LEMLELEKQR FKWKRFSRKR DHELEKLRME 420 NERMKLENER MALELKRKEM GLDFN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012066032.1 | 0.0 | uncharacterized protein LOC105629120 | ||||
TrEMBL | A0A067L6X5 | 0.0 | A0A067L6X5_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_022469m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5001 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-175 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Entrez Gene | 105629120 |
Publications ? help Back to Top | |||
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