PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00243.30
Common NameJCGZ_25189, LOC105629120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 445aa    MW: 51016.7 Da    PI: 6.6809
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00243.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.27.2e-26121215183
       trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                    +Wt+++v++Li+a+++++e++ +++           +kk++W++vsk+m+erg ++sp+qC++k+++lnkrykk++++ +++ +++++++ ++++
  Jcr4S00243.30 121 KWTDKMVRLLITAVSYIGEDVTSDCgggmrrkfavlQKKGKWKSVSKVMAERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLE 215
                    7*********************99889999999999**********************************************5588888877766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-23119243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGNLSQGSM IPGVAPFGGL DLQGSMRVHH QAQHQHALHH QQHPLHRQGS SAHSSIQEGF  60
PLTMGTLHNS DQNISVSDYN KGDKGKNSAS DEDEPSYTED GADGHNDASR GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED VTSDCGGGMR RKFAVLQKKG KWKSVSKVMA ERGHHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLEYIDLS EKEKEDVRKI LSSKHLFYEE  240
MCSYHNANRL HLPHDPALQR SLQLALRSKD DHDSDDLRRH QHDDLDEDDQ EAETDDHDEF  300
EENHPSRGDS KGFYGALGGS MKRLRPGLGH EDACFGNSSQ DGNKGSYSHV QIPQVDMNQI  360
SPESSRAAWL QKQWMESRSL QLEEQKVQIQ LEMLELEKQR FKWKRFSRKR DHELEKLRME  420
NERMKLENER MALELKRKEM GLDFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066032.10.0uncharacterized protein LOC105629120
TrEMBLA0A067L6X50.0A0A067L6X5_JATCU; Uncharacterized protein
STRINGcassava4.1_022469m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-175sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]