PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00241.40

Common Name

JCGZ_03496, LOC105632358

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 447aa MW: 49787.2 Da PI: 7.9143

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00241.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.9	2.7e-18	16	102	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +Wt++e+l Liea+r+++ +++rg l+ ++W++v+ ++ ++ +s+ qC++k+e+l+kry+ +k++ + + s++ +f Jcr4S00241.40 16 CWTQEETLILIEAYRDKWFSVNRGHLRSADWDAVATAVnesASADPPKSSLQCRHKIEKLRKRYRTEKQRCLNYPGRFLSSWNLFPL 102 8***********************************5444445589******************9876665566666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.3E-19	15	106	No hit	No description
PROSITE profile	PS50090	6.353	17	76	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MSTPPESTTR RVPPPCWTQE ETLILIEAYR DKWFSVNRGH LRSADWDAVA TAVNESASAD 60 PPKSSLQCRH KIEKLRKRYR TEKQRCLNYP GRFLSSWNLF PLLDSMAIGS AGNKQCQGIE 120 ESNDIGDGFR VKTLGDRYLV TPNNLSHMDR DFEPDFDLGL DPDLALRARK VSRIEAVSDS 180 NISHASENGF YLKPVSDLNA VSVAFRPRYC GGRVVNGYET GVPMKMEKTE MGSSFLPQGP 240 KLKSYRKISG DSDVGEGGDA YVGFPVKTLG DVPRGFRPKN YRKIDRKASP NFVNDLNYRS 300 ETINDKRDRL VAENVVGGWI SPPPVFKANN YCKIDGSSKL DVDSKILNGF GDVKKSDIQG 360 TGRKEALDPI AELVSALRCM ILESQKQIVD AFVTTLLEKK KKQREEVEEL SPYEDKNGDN 420 SQVAALDCES IGKSAVVKEG CQDVVLT

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MSTPPESTTR RVPPPCWTQE ETLILIEAYR DKWFSVNRGH LRSADWDAVA TAVNESASAD  60
PPKSSLQCRH KIEKLRKRYR TEKQRCLNYP GRFLSSWNLF PLLDSMAIGS AGNKQCQGIE  120
ESNDIGDGFR VKTLGDRYLV TPNNLSHMDR DFEPDFDLGL DPDLALRARK VSRIEAVSDS  180
NISHASENGF YLKPVSDLNA VSVAFRPRYC GGRVVNGYET GVPMKMEKTE MGSSFLPQGP  240
KLKSYRKISG DSDVGEGGDA YVGFPVKTLG DVPRGFRPKN YRKIDRKASP NFVNDLNYRS  300
ETINDKRDRL VAENVVGGWI SPPPVFKANN YCKIDGSSKL DVDSKILNGF GDVKKSDIQG  360
TGRKEALDPI AELVSALRCM ILESQKQIVD AFVTTLLEKK KKQREEVEEL SPYEDKNGDN  420
SQVAALDCES IGKSAVVKEG CQDVVLT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012070112.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A067L637	0.0	A0A067L637_JATCU; Uncharacterized protein
STRING	cassava4.1_023451m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-30	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	105632358

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]