PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00223.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 550aa    MW: 61884.1 Da    PI: 7.4636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00223.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-145198254
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +++h+e+ErrRR+riN  +++Lr+llP++     +K +Ka+ L ++v+++k+L
  Jcr4S00223.20 51 CKSHKEAERRRRQRINAHLSTLRTLLPSS-----TKTDKASLLAEVVHHVKEL 98
                   789*************************9.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.59E-1347101No hitNo description
PROSITE profilePS5088816.0124998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-125198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1352101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1353104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-1355104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.64E-5143216No hitNo description
Gene3DG3DSA:3.30.70.2601.8E-4144192No hitNo description
Gene3DG3DSA:3.40.1050.104.0E-47336534IPR001765Carbonic anhydrase
SuperFamilySSF530562.35E-38336534IPR001765Carbonic anhydrase
SMARTSM009472.0E-16366532IPR001765Carbonic anhydrase
PfamPF004848.2E-15374429IPR001765Carbonic anhydrase
PfamPF004847.9E-6453523IPR001765Carbonic anhydrase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004089Molecular Functioncarbonate dehydratase activity
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MLPFQTYYGF DHSQNRFVQE PTLVNVMEMD GAGESVLSSS SRLEKKSTEA CKSHKEAERR  60
RRQRINAHLS TLRTLLPSST KTDKASLLAE VVHHVKELRK QAAHVARQDR DSCCGSESES  120
EKYWPFPGES DETILSYCDG ETKTMRVSVC CEDRPGLNRD LSQAIRSVKA RAVKAEMMTV  180
GGRTRSVVVL QWGSGGGGGG EEDVGVLRRA LKAVVENRVS RSGLGQTTPE SEPEPEMVWQ  240
TRLRTGSIVT AVVAFRHVSV KWGFHGSPFS AIDGFPRNWL NSASEKLAKV NDVRLGFPSS  300
HKENPILRVD ASISSLGLVQ EDRSVQVQNV PKSGGRQNSF DEMKQRFLNF KQYKYLKEAE  360
HFKNLAELQS PKFMVIACVD SRVCPSNILG FQPGEAFTVR NVANIVPPLE NGPTETNAAL  420
EFAVNTLEIF GDYLTKISMN FLDDNFLTAL HFSCSFIEKW VATADIAKLR TEADASGLSF  480
DQQCKYCEKE SINRSLLNLL TYPWIEVRVR KEMLFVHGGY YDFLNCTFEK WTLDFIEGNR  540
FSAKDTEFWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ekj_A1e-453295427220BETA-CARBONIC ANHYDRASE
1ekj_B1e-453295427220BETA-CARBONIC ANHYDRASE
1ekj_C1e-453295427220BETA-CARBONIC ANHYDRASE
1ekj_D1e-453295427220BETA-CARBONIC ANHYDRASE
1ekj_E1e-453295427220BETA-CARBONIC ANHYDRASE
1ekj_F1e-453295427220BETA-CARBONIC ANHYDRASE
1ekj_G1e-453295427220BETA-CARBONIC ANHYDRASE
1ekj_H1e-453295427220BETA-CARBONIC ANHYDRASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067989.10.0beta carbonic anhydrase 5, chloroplastic
TrEMBLA0A067KZ650.0A0A067KZ65_JATCU; Carbonic anhydrase
STRINGPOPTR_0005s17860.11e-117(Populus trichocarpa)
STRINGXP_002514033.11e-117(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-21bHLH family protein