PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00210.60

Common Name

JCGZ_20894, LOC105628410

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 362aa MW: 39752.2 Da PI: 6.6334

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00210.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.6e-10	166	224	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ Jcr4S00210.60 166 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 224 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-16	162	226	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	164	227	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.2E-9	166	220	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-11	166	217	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-10	166	220	No hit	No description
CDD	cd14703	1.97E-25	167	216	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDKDKALGHC SGLPPPSGRA SSDPGHFGHG SDSSRFSHDI SRMPDNPPKN LGHRRAHSEI 60 LTLPDDISFD SDLGVVGGAD GPSFSDETEE DLLSMYLDMD KFNASSATSG MQLGESSALT 120 PAAPTSAPAQ APVDVSAGPS ERPRQLILRK PMSAAKLAEL ALIDPKRAKR IWANRQSAAR 180 SKERKMRYIA ELERKVQTLQ TEATSLSAQL TLLQRDTNGL TAENSELKLR LQTMEQQVHL 240 QDALNDALKE EIQHLKVLTG QAMANGGGSM MNFSSFGGGQ QFYPNNHSVH TLLTTQQFQQ 300 LQIHSQKQQH QFQQHQLHQL QQQQLQQQDQ QQQVGDLKMR GNMSSQNLKD NASDVSSTAT 360 ND

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDKDKALGHC SGLPPPSGRA SSDPGHFGHG SDSSRFSHDI SRMPDNPPKN LGHRRAHSEI  60
LTLPDDISFD SDLGVVGGAD GPSFSDETEE DLLSMYLDMD KFNASSATSG MQLGESSALT  120
PAAPTSAPAQ APVDVSAGPS ERPRQLILRK PMSAAKLAEL ALIDPKRAKR IWANRQSAAR  180
SKERKMRYIA ELERKVQTLQ TEATSLSAQL TLLQRDTNGL TAENSELKLR LQTMEQQVHL  240
QDALNDALKE EIQHLKVLTG QAMANGGGSM MNFSSFGGGQ QFYPNNHSVH TLLTTQQFQQ  300
LQIHSQKQQH QFQQHQLHQL QQQQLQQQDQ QQQVGDLKMR GNMSSQNLKD NASDVSSTAT  360
ND

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU664724	1e-112	EU664724.1 Jatropha curcas microsatellite JATR114 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065205.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-138	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A067LI27	0.0	A0A067LI27_JATCU; Uncharacterized protein
STRING	cassava4.1_008721m	1e-176	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	1e-123	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	105628410

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]