PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00208.50

Common Name

JCGZ_06985, LOC105637440

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 360aa MW: 41795.1 Da PI: 5.1818

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00208.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.8	3.7e-10	51	125	2	78
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 Wt++e l L++ +e + ++ + ++W+ + +++ ++r+ +qC++kw++l +y +ik+++++ +++s Jcr4S00208.50 51 WTNKEALILVNEIAAVEGDCLKALSSYQKWKIIVENCTVMDVSRTLNQCRSKWNSLLAEYNQIKQWDSQS--KTESY 125 *******************************************************************984..34334 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-4	50	109	IPR009057	Homeodomain-like
Pfam	PF13837	2.1E-8	50	126	No hit	No description
PROSITE profile	PS50090	7.317	51	107	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEPIESTDEL QNSRTPQKRG FRLRQGMEDS YSYKSSVARA PRTRSQVAPV WTNKEALILV 60 NEIAAVEGDC LKALSSYQKW KIIVENCTVM DVSRTLNQCR SKWNSLLAEY NQIKQWDSQS 120 KTESYWLLDC ETRKQFRLPE SFDKDLFKAI DNYVRAQKDH ADTDPDTDPE VEANLLNVIA 180 KLGPKRQRRR SVVLKTQQEE KHQICLTIEQ PQEVHIDEES QKNCEEENHQ MIGEKPQPQI 240 VHVDEEPQES RVEDKPQESC RKEEAQKINA EEKYQNSLVE EQPKSIRKRK KKTACMQETE 300 KMMVERLCEN AELIHAIAQG NVPGIAEFQT DFVRRQGDKL IACLGDIVDI LGQFPYLVQE

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEPIESTDEL QNSRTPQKRG FRLRQGMEDS YSYKSSVARA PRTRSQVAPV WTNKEALILV  60
NEIAAVEGDC LKALSSYQKW KIIVENCTVM DVSRTLNQCR SKWNSLLAEY NQIKQWDSQS  120
KTESYWLLDC ETRKQFRLPE SFDKDLFKAI DNYVRAQKDH ADTDPDTDPE VEANLLNVIA  180
KLGPKRQRRR SVVLKTQQEE KHQICLTIEQ PQEVHIDEES QKNCEEENHQ MIGEKPQPQI  240
VHVDEEPQES RVEDKPQESC RKEEAQKINA EEKYQNSLVE EQPKSIRKRK KKTACMQETE  300
KMMVERLCEN AELIHAIAQG NVPGIAEFQT DFVRRQGDKL IACLGDIVDI LGQFPYLVQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	290	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076290.1	0.0	trihelix transcription factor ASR3
TrEMBL	A0A067KNM3	0.0	A0A067KNM3_JATCU; Uncharacterized protein
STRING	cassava4.1_011610m	1e-129	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6732	26	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	6e-59	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	105637440

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]