PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00208.310 | ||||||||
Common Name | JCGZ_07008, LOC105637467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28382.4 Da PI: 4.5596 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll d+v+++G g W+ ++++ g++R++k c++rw++yl Jcr4S00208.310 14 KGSWTASEDKLLTDYVAMYGEGKWSNVSKRTGLKRCGKGCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Jcr4S00208.310 67 RGNISDDEEQLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111 7899******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.763 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.448 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRTPRSSKD GLNKGSWTAS EDKLLTDYVA MYGEGKWSNV SKRTGLKRCG KGCRLRWLNY 60 LRPDIKRGNI SDDEEQLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLAKRAPDLQ 120 LPLPELDHQK KQPFQLMSIP SFQLPDAHQE IREDDEHQSL EAANESETSD DPSEFLMDFN 180 VDDFCQMLES DFSSPNDDPS AAAAAVNGRS SEQVAFPVQF EGNWDADNNV NGSEFMSLVN 240 FLDSDVEWPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034689 | 0.0 | KM034689.1 Jatropha curcas clone JcMYB069 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076322.1 | 0.0 | transcription factor MYB82 | ||||
Swissprot | Q9FJA2 | 5e-56 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A067KBC2 | 0.0 | A0A067KBC2_JATCU; MYB family protein | ||||
STRING | XP_002527968.1 | 1e-90 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 4e-58 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105637467 |