PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00208.150

Common Name

JCGZ_06993, LOC105637450

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 293aa MW: 32150.6 Da PI: 6.5085

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00208.150	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	54.2	3.3e-17	143	198	4	59
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++r rr+ +NRe+ArrsR+RK+a + Le v++L++eN +L k+l+ ++++ Jcr4S00208.150 143 VRRIRRMVSNRESARRSRKRKQAHLHDLELQVDQLSGENASLYKQLSDTTQQYRDA 198 689****************************************9999998888755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.7E-19	140	204	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.185	142	194	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.69E-13	143	195	No hit	No description
Pfam	PF00170	9.4E-15	143	195	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-14	144	196	No hit	No description
CDD	cd14702	8.26E-21	145	196	No hit	No description
PROSITE pattern	PS00036	0	147	162	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MKRSESELAL QEVIKKTSHS HIIKGGDMKE IHDIAFPSEL EGFFSDFCSA DFAFAFKTLD 60 KMNGLTSGGV AESVGVWSGH MSPKQSRTSS TPIDAHSSVC ASANKAQDRD NQTRVLTSSG 120 SSDDEDVEIE AGPCEQSTNP TDVRRIRRMV SNRESARRSR KRKQAHLHDL ELQVDQLSGE 180 NASLYKQLSD TTQQYRDADT NNRVKLAEDM VTRGSLTCSL NQLIQNQHHL TSPPPLNRHS 240 IRAVANVSPT VTINGDHENS YGGMALSGPA LSDANLRNSV ISDAVSCVTE LWH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	162	RRSRKRK
2	156	163	RRSRKRKQ
3	158	163	SRKRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012076304.1	0.0	basic leucine zipper 9
TrEMBL	A0A067KBB0	0.0	A0A067KBB0_JATCU; Uncharacterized protein
STRING	cassava4.1_012780m	1e-106	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4195	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-56	basic leucine zipper 9

Link Out ? help Back to Top
Entrez Gene	105637450

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]