PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00207.50 | ||||||||
Common Name | JCGZ_17695, LOC105644544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 227aa MW: 25940.9 Da PI: 6.2529 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1.1e-18 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++q+G g+W++ ++ g+ R++k+c++rw +yl Jcr4S00207.50 5 KGPWTPEEDHILINYIQQYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 52 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 58 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l Jcr4S00207.50 58 RGNFTRDEEETIIKLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 103 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.11E-31 | 1 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.903 | 1 | 56 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-14 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-17 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 6 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.18E-11 | 7 | 52 | No hit | No description |
PROSITE profile | PS51294 | 20.799 | 57 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 58 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-10 | 60 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 60 | 108 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGLKKGPWTP EEDHILINYI QQYGHGNWRA LPKQAGLLRC GKSCRLRWTN YLRPDIKRGN 60 FTRDEEETII KLHEMLGNRW SAIAARLPGR TDNEIKNVWH THLKKRLKQN NSNDLNQENK 120 KRSIDTDRVS QELKPELELA SLPNIGGYHE QGITEDRPVS PRQCSSDVSS VTTVDDGINN 180 LSSMKVESSE NFPEMDDNFW SEVLSSDNSS SADDFPAAAQ LQITVFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 3 | 107 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 108 | LKKRLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034669 | 0.0 | KM034669.1 Jatropha curcas clone JcMYB049 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085323.1 | 1e-166 | transcription factor MYB14 | ||||
Swissprot | Q9SJX8 | 2e-70 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A067JRM0 | 1e-164 | A0A067JRM0_JATCU; MYB family protein | ||||
STRING | cassava4.1_013493m | 1e-107 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-70 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Entrez Gene | 105644544 |
Publications ? help Back to Top | |||
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