PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00206.70

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 1585aa MW: 177653 Da PI: 7.9822

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00206.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.2	4.3e-31	927	1019	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r +++k +++ +r+raetr+gCka+l+vk +++g+w v+ +++eHnHel+p Jcr4S00206.70 927 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVDKDKPacpDTRVKRPRAETRVGCKAMLVVKIRDSGRWAVSAFVKEHNHELVP 1019 9***************************************99999999999************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03547	7.5E-59	10	400	IPR004776	Membrane transport protein
Pfam	PF03547	2.0E-41	431	716	IPR004776	Membrane transport protein
Pfam	PF03547	8.0E-10	737	782	IPR004776	Membrane transport protein
Pfam	PF03101	3.9E-29	927	1019	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-31	1140	1231	IPR018289	MULE transposase domain
Pfam	PF04434	5.5E-11	1408	1455	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.004	1420	1456	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.7E-9	1431	1458	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1585 aa Download sequence Send to blast
MQLLNLFVIA SMPVLKVLLI TALGSFLALE YVNVLGEEAR KQINSVVFYV FNPALIGSNL 60 AKTITFESIS LLWFMPVNIL VTFIIGSILG WLLIKVTATP QHLRGLILGC CAAAICKEKG 120 SPFGAPDVCY TYGIAYASLS MAIGAVFLWS YVYNIMRISS SEMNQQVDNA DSDTETNIKT 180 TVGAPKCIQG NYYSVDLSSK ESLISAELAS PLLPENQEIV KNLSWTQFID KIKERSRKIS 240 EKLNLKALFA PSTIGAIVGF AIGVVPQIRK LLIGASAPLR VIEDSAYLLG DAAIPIVTLI 300 VGGNLLKGLK GSGIRWSLIV GILIVRYVLL PVMGVVTVKT AVHFGLVHSD KLYQFILLLQ 360 FAVPPAMNIG TMTQLFGRGQ SECSVIMLWT YAFASVSLTL XLNEYVAAAW QSKCRSGETG 420 IVAGDISFLR TRSGVLGVDA RKHLNNVVFF IFNPALVGSN LATYITLKSM ETLWFMPFNI 480 LITFIVGSIL GWLLIRSTRA PHDLRGLVLG CCSAGNLGNM PLIIIPAVCK ERGSPFGDVD 540 VCYKHGLAYA SLSMAIGAVY MWSYVYNIMR IYSSNNCEGA KLDDLTKVAN SPGETTENLS 600 KCSAGPLLPL KNHSPNEDHT NHFELDCTVS EEKRSVVEKI KHGLQMVKKF HFRRLFAPST 660 AGAIVGFIIG AIPQFRKALI DDNAPLRVVQ DSVSLLGEAA IPTVTLVVGA NLLKGLKGSR 720 GPASSGPRDH NPLYQFVLLL QFALPPAMNI GTMTQLFGTG ESECSVILLW TYALASVSLT 780 LWSTFFLWLR WYELKVREEP RKTKGKTMAA TKKKKNVMKA EYDKDPTALE QIMANEVIEF 840 DMMGLGDDTM DIHQHPIHVN VDVDEHEEVE DEQGEEEKQH IHPLRNFYHS QNSHSSTAAQ 900 LYIPQGDTNL EPYEGMEFES EEAAKAFYNS YARRVGFSTR VSMSRRSRRD GAIIQRSFVC 960 AKEGFRVDKD KPACPDTRVK RPRAETRVGC KAMLVVKIRD SGRWAVSAFV KEHNHELVPP 1020 DKVHCLRSHR HVSGSAKSLI DTLQGAGIGP SGIMSALIKE YGGISNVGFT ERDCRNYMRS 1080 SRQRTLGGDT QLLLDYLRNK HSENPAFFYA VQGDEDQCMS NIFWADPKAR TNYTYFGDTV 1140 TFDTTYRSNR YRLPFAPFTG VNHHGQPVLF GCALLINESE ESFIWLFKTW LVAMSGRPPV 1200 SITTDHDRVI RLAVTQVFPE TRHRFCKWHI FNECQEKLSH VLSEHPSFEP ELHKCVNLTE 1260 SIEEFESCWL SMIDTYHLKE HEWLQSIYFD RRQWVPAYLR DTFFAEMSIT QRSDSINSYF 1320 DGYINASTTL QLFVKQYEKA LESRYEKEVK ADYDTINTAP VLKTPSPMEK QASEMYTKKL 1380 FVKFQEELVE TLTFLATKVE DEEAITVYRV AKFEENHNAY FVSFNVHEMK ATCSCQMFEF 1440 SGLLCRHILT VFRVKNVLTL PSHYVLKRWT RNAKSGVILE EHTSTLHIRS RESHTVRYGN 1500 LRHEALKYVD EGVKSVEIYN VAMEALQEAA NKVVLAKKNS GAVVITNGAG TEDHPHQRRW 1560 ANNTSGTQKW SLKPPASMGN WESSL

Sequence ? help Back to Top

Protein Sequence Length: 1585 aa Download sequence Send to blast

MQLLNLFVIA SMPVLKVLLI TALGSFLALE YVNVLGEEAR KQINSVVFYV FNPALIGSNL  60
AKTITFESIS LLWFMPVNIL VTFIIGSILG WLLIKVTATP QHLRGLILGC CAAAICKEKG  120
SPFGAPDVCY TYGIAYASLS MAIGAVFLWS YVYNIMRISS SEMNQQVDNA DSDTETNIKT  180
TVGAPKCIQG NYYSVDLSSK ESLISAELAS PLLPENQEIV KNLSWTQFID KIKERSRKIS  240
EKLNLKALFA PSTIGAIVGF AIGVVPQIRK LLIGASAPLR VIEDSAYLLG DAAIPIVTLI  300
VGGNLLKGLK GSGIRWSLIV GILIVRYVLL PVMGVVTVKT AVHFGLVHSD KLYQFILLLQ  360
FAVPPAMNIG TMTQLFGRGQ SECSVIMLWT YAFASVSLTL XLNEYVAAAW QSKCRSGETG  420
IVAGDISFLR TRSGVLGVDA RKHLNNVVFF IFNPALVGSN LATYITLKSM ETLWFMPFNI  480
LITFIVGSIL GWLLIRSTRA PHDLRGLVLG CCSAGNLGNM PLIIIPAVCK ERGSPFGDVD  540
VCYKHGLAYA SLSMAIGAVY MWSYVYNIMR IYSSNNCEGA KLDDLTKVAN SPGETTENLS  600
KCSAGPLLPL KNHSPNEDHT NHFELDCTVS EEKRSVVEKI KHGLQMVKKF HFRRLFAPST  660
AGAIVGFIIG AIPQFRKALI DDNAPLRVVQ DSVSLLGEAA IPTVTLVVGA NLLKGLKGSR  720
GPASSGPRDH NPLYQFVLLL QFALPPAMNI GTMTQLFGTG ESECSVILLW TYALASVSLT  780
LWSTFFLWLR WYELKVREEP RKTKGKTMAA TKKKKNVMKA EYDKDPTALE QIMANEVIEF  840
DMMGLGDDTM DIHQHPIHVN VDVDEHEEVE DEQGEEEKQH IHPLRNFYHS QNSHSSTAAQ  900
LYIPQGDTNL EPYEGMEFES EEAAKAFYNS YARRVGFSTR VSMSRRSRRD GAIIQRSFVC  960
AKEGFRVDKD KPACPDTRVK RPRAETRVGC KAMLVVKIRD SGRWAVSAFV KEHNHELVPP  1020
DKVHCLRSHR HVSGSAKSLI DTLQGAGIGP SGIMSALIKE YGGISNVGFT ERDCRNYMRS  1080
SRQRTLGGDT QLLLDYLRNK HSENPAFFYA VQGDEDQCMS NIFWADPKAR TNYTYFGDTV  1140
TFDTTYRSNR YRLPFAPFTG VNHHGQPVLF GCALLINESE ESFIWLFKTW LVAMSGRPPV  1200
SITTDHDRVI RLAVTQVFPE TRHRFCKWHI FNECQEKLSH VLSEHPSFEP ELHKCVNLTE  1260
SIEEFESCWL SMIDTYHLKE HEWLQSIYFD RRQWVPAYLR DTFFAEMSIT QRSDSINSYF  1320
DGYINASTTL QLFVKQYEKA LESRYEKEVK ADYDTINTAP VLKTPSPMEK QASEMYTKKL  1380
FVKFQEELVE TLTFLATKVE DEEAITVYRV AKFEENHNAY FVSFNVHEMK ATCSCQMFEF  1440
SGLLCRHILT VFRVKNVLTL PSHYVLKRWT RNAKSGVILE EHTSTLHIRS RESHTVRYGN  1500
LRHEALKYVD EGVKSVEIYN VAMEALQEAA NKVVLAKKNS GAVVITNGAG TEDHPHQRRW  1560
ANNTSGTQKW SLKPPASMGN WESSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5