PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00200.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HB-other

Protein Properties

Length: 1085aa MW: 119675 Da PI: 9.5772

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00200.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.5	7.9e-07	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e ++++ g+t +qV+ +F +Ra+ +k Jcr4S00200.30 69 KRPRDLLNPKAIKYMQAIFSIKDAISKKECHVISAQFGVTVTQVRDFFASQRARVRK 125 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.248	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-6	68	128	IPR009057	Homeodomain-like
SMART	SM00389	5.4E-4	68	130	IPR001356	Homeobox domain
CDD	cd00086	1.33E-4	69	125	No hit	No description
Pfam	PF00046	2.2E-4	69	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.2E-6	69	136	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1085 aa Download sequence Send to blast
MEALKGNLEE IEIGSSVESF QKFLDSQKEL FHSQIDQLQS IVVAQCKLTG VNPLSQEMAA 60 GAMSIKIGKR PRDLLNPKAI KYMQAIFSIK DAISKKECHV ISAQFGVTVT QVRDFFASQR 120 ARVRKLVRLS REKTSRTNVC KEPQEGAATS SDSMMPINLA PLNSVHPDPV PIGSLGCNPV 180 PLNSVSPDSA PLNYIGHDPA PLNSIGHDPA PLNAIGHSNV EEAPSCSTQD DLIPGLHDLD 240 KHFVENIFYL LRKEETFSGQ VKLMEWILRI RNPSVLSWFL NKGGVMILAT WLSQAAAEEQ 300 TSVLCHMPLH KSLPEHMSAI LHSVNRLRFY RTSDISNRAR VLLSRWSKMF ARSLKKPNGI 360 KSSVDEQEMI LKRSIDEIMG NELWHSDVSN PENAITLSES SENIRKMEPS QTLKLLPASE 420 DSSRKHILGV SSSLSVVQEE LDSNDSSPFC VSGVPDTRER RKVQLVEQPG QKTAGRSPQA 480 TKPVSVNQGR PMSTDDIQKA KMRALFMQSK YGKTGSSSNG PNGTKTEGLN KPSNTSSGNL 540 FPASKVPLRP KIEEQKKPVI VPTVISNKQG PLDPKHKMGL KEPLGEFCRR VQIPWQTPPV 600 AIRQAKGGKR CRLAVADHQI KLNNHWRVGT GENSKEVDVQ KNRNRREIET IYHTVQEIPF 660 NPKEPWDLEM DYDDTLTPDI PIEQPPDTDG SEAQLPNNET AAASVAPSLP QIGGGSASEP 720 DLELLAVLLK NPELVFALTS GQAGNLSTED TVKLLDVIKR SGNGLAGSLN GFSGKVEEKV 780 EVSLPSPTPS SNPGTNSWCQ WGKLEQVSGR VLCLMKCAFP AIRGPVKKIM SGWRPEVAKN 840 PFSRENRVPQ VQTNIYSSLL QPQSHNQGSD FRTSQRQATM QLLSQQLQAA MPSFSLPQTT 900 STIPDNRQPS MLLPLHQNSS MLQTSASEMG LQKYSSTTGP SFAMSTPERR PVSFPIATPT 960 PVVHSSSRLS STGNMGSMPG SWRAGQGLAS NSISQVKQNN YEPPSYRGSV QPQLRAGAPN 1020 WERNEGFESW SPENSPVRSP EYIAGSNYPG SRVNSGRNYN PDNRNRQRNY PGQRELNRNG 1080 NRRWH

Sequence ? help Back to Top

Protein Sequence Length: 1085 aa Download sequence Send to blast

MEALKGNLEE IEIGSSVESF QKFLDSQKEL FHSQIDQLQS IVVAQCKLTG VNPLSQEMAA  60
GAMSIKIGKR PRDLLNPKAI KYMQAIFSIK DAISKKECHV ISAQFGVTVT QVRDFFASQR  120
ARVRKLVRLS REKTSRTNVC KEPQEGAATS SDSMMPINLA PLNSVHPDPV PIGSLGCNPV  180
PLNSVSPDSA PLNYIGHDPA PLNSIGHDPA PLNAIGHSNV EEAPSCSTQD DLIPGLHDLD  240
KHFVENIFYL LRKEETFSGQ VKLMEWILRI RNPSVLSWFL NKGGVMILAT WLSQAAAEEQ  300
TSVLCHMPLH KSLPEHMSAI LHSVNRLRFY RTSDISNRAR VLLSRWSKMF ARSLKKPNGI  360
KSSVDEQEMI LKRSIDEIMG NELWHSDVSN PENAITLSES SENIRKMEPS QTLKLLPASE  420
DSSRKHILGV SSSLSVVQEE LDSNDSSPFC VSGVPDTRER RKVQLVEQPG QKTAGRSPQA  480
TKPVSVNQGR PMSTDDIQKA KMRALFMQSK YGKTGSSSNG PNGTKTEGLN KPSNTSSGNL  540
FPASKVPLRP KIEEQKKPVI VPTVISNKQG PLDPKHKMGL KEPLGEFCRR VQIPWQTPPV  600
AIRQAKGGKR CRLAVADHQI KLNNHWRVGT GENSKEVDVQ KNRNRREIET IYHTVQEIPF  660
NPKEPWDLEM DYDDTLTPDI PIEQPPDTDG SEAQLPNNET AAASVAPSLP QIGGGSASEP  720
DLELLAVLLK NPELVFALTS GQAGNLSTED TVKLLDVIKR SGNGLAGSLN GFSGKVEEKV  780
EVSLPSPTPS SNPGTNSWCQ WGKLEQVSGR VLCLMKCAFP AIRGPVKKIM SGWRPEVAKN  840
PFSRENRVPQ VQTNIYSSLL QPQSHNQGSD FRTSQRQATM QLLSQQLQAA MPSFSLPQTT  900
STIPDNRQPS MLLPLHQNSS MLQTSASEMG LQKYSSTTGP SFAMSTPERR PVSFPIATPT  960
PVVHSSSRLS STGNMGSMPG SWRAGQGLAS NSISQVKQNN YEPPSYRGSV QPQLRAGAPN  1020
WERNEGFESW SPENSPVRSP EYIAGSNYPG SRVNSGRNYN PDNRNRQRNY PGQRELNRNG  1080
NRRWH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082704.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	A0A067JW28	0.0	A0A067JW28_JATCU; Uncharacterized protein
STRING	cassava4.1_000740m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein