PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00199.90 | ||||||||
Common Name | JCGZ_24704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | AP2 | ||||||||
Protein Properties | Length: 590aa MW: 65399.5 Da PI: 6.4269 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.4 | 6.2e-12 | 271 | 327 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g Jcr4S00199.90 271 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 327 78*******************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 48 | 3e-15 | 370 | 421 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Jcr4S00199.90 370 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 421 78****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-15 | 271 | 337 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-9 | 271 | 327 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.04E-19 | 271 | 337 | No hit | No description |
PROSITE profile | PS51032 | 17.332 | 272 | 335 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-12 | 272 | 336 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-23 | 272 | 341 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 273 | 284 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-10 | 370 | 421 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 370 | 431 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.49E-25 | 370 | 431 | No hit | No description |
PROSITE profile | PS51032 | 19.006 | 371 | 429 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 371 | 429 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-34 | 371 | 435 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 411 | 431 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MSNWLGFSLS PHLRIDEGFG REEQAAAFSS HHDISGMPLH SDGSLCVVDP FRRSSNGTQD 60 WRYENTLDAT SASEEGPKLE DFLGCYSNSP SDETKVYCQE DQIPTQNHIN RINVNVAPAF 120 TTTNNGDIDT SSGENLTNAS SLVQSYNHHY NDNPQTLIPN DNLQHCDPNP SLSHNNSIYH 180 VPFESNGTCV SGFKSWLKQN PFSSDKSSNE VNNCNFQPLS LTMSPSSQNG LVAVSPLQVI 240 DNRQRPTTVG KSLVREPVPR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCRKEGQT 300 RKGRQGGYDK EEKAARAYDL AALKYWGPTT HINFPLSTYE KELEEMKHMT RQEFVANLRR 360 KSSGFSRGAS VYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR 420 GTSAVTNFDI SRYDVKRICS SSTLIASDLA KRSPKHLAPA STLEDDNSCA SSTSPKPLLA 480 MTSGEASVSD ELADIVWSNA NGNEHQQQQD DNNINNDVTL VGSSSRNSSN PVNLKCSVGL 540 GTDFSDGIGD YSQGYSLQDS KYEDGNNGSN NRIGNLGLVH QVPMFALWNE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020533865.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-137 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A067L8B9 | 0.0 | A0A067L8B9_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_034000m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10274 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-134 | AP2 family protein |
Publications ? help Back to Top | |||
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