PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00199.60 | ||||||||
Common Name | JCGZ_24707 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 26250.8 Da PI: 7.2467 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d+++ G g W+ +++ g++R++k+c++rw++yl Jcr4S00199.60 14 RGAWTAMEDKILTDYIQIQGEGKWRNLPKKAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Jcr4S00199.60 67 RGNITDDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999******************.*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.692 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.26E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.325 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.30E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGRCPCCPKE GLNRGAWTAM EDKILTDYIQ IQGEGKWRNL PKKAGLNRCG KSCRLRWLNY 60 LRPGIKRGNI TDDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TICKKLQPLN 120 PTVNKSLSTL NTEPNKVFWT KASRCTKVVI PNNPKPQNIN QPEMGNISGD DNENFHFILE 180 ENYNNSSDSF LDFEMDECLL SELLDTDSFN WIEDHQVLLE RREERI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034683 | 0.0 | KM034683.1 Jatropha curcas clone JcMYB063 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068888.1 | 1e-166 | transcription factor MYB3 | ||||
Swissprot | Q9S9K9 | 3e-59 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A067L0J8 | 1e-165 | A0A067L0J8_JATCU; MYB family protein | ||||
STRING | cassava4.1_022478m | 6e-95 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-60 | myb domain protein 6 |