PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00199.20
Common NameJCGZ_24711, LOC105631404
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 622aa    MW: 67865.1 Da    PI: 8.0417
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00199.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48e-09507555348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
    Jcr4S00199.20 507 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 555
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225500559IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-13502559IPR009057Homeodomain-like
SuperFamilySSF466897.48E-16502561IPR009057Homeodomain-like
SMARTSM007172.9E-9504557IPR001005SANT/Myb domain
CDDcd116601.38E-19506556No hitNo description
PfamPF002497.4E-7507555IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
METEVGVEGN DEGKFEESTY GKSYSSLSTT KQLSDPVVYK LVRVEGDGRL VPATDDEVME  60
VKGLLINEKS EMHIVADTGQ AVGCISNDGS SSGMLLQLES SEACGSPDYS SAYIIVDSQC  120
SDQHDKLPGI DEKLQSEIPL QETVPSLAPS LNESHVHQPG SIRDCSDPPE NQTESGSFTC  180
ASVTSSKPDF SKLKGEICLD NLSIKELHET FRATFGRETT VKDKQWLKRR ITMGLTNSCD  240
VSATTFIIKD NKLVKKGKEE GSVNVDAFAN DPVTGTINNS QEGTPITHDS QLEDQVISDK  300
RNHSIGDNSG SEDHNTEQRA AKRVRKPTRR YIEELSEVES KESGGRLRTS VKSSGIGQVS  360
SKSHLRPVRN VSTDGRTVVT RLDSLGGSGI QIPCVSRVRR SRPRKNFMAL LKFNPSSAGM  420
TATLVKKALS AHSFLPDNDA GNKLMKAQSA PAKVQHQDKE KPLTAVGAVE LGHHKMLKQV  480
DSSGDSDDNI VTVPTSKGGI RRKHHRAWTL SEVMKLVEGV SRYGAGRWSE IKRLAFASYS  540
YRTSVDLKDK WRNLLKASFA QIPADKGINS RKNAATMPIP EPILLRVREL AEMQSQVPPN  600
ISTSKVAGST GNSVHEKQSG YL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398404RRSRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068894.10.0uncharacterized protein LOC105631404 isoform X1
TrEMBLA0A067KX710.0A0A067KX71_JATCU; Uncharacterized protein
STRINGXP_002521340.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-127TRF-like 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]