PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00198.10 | ||||||||
Common Name | JCGZ_10097 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 9240.28 Da PI: 10.1409 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 13 | 57 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT++ + + +a + + ++ +W+ +ar +g g+t+ ++k ++ Jcr4S00198.10 13 SWTAQQNKAFERALAVYDKDtpdRWANVARAVG-GKTADEVKRHYE 57 6********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.041 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 4.1E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-5 | 12 | 63 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-13 | 13 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-6 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-6 | 14 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MASSSMSSRG SASWTAQQNK AFERALAVYD KDTPDRWANV ARAVGGKTAD EVKRHYELLV 60 RDVKYIESGQ VPFPNYRTTG TRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-40 | 7 | 80 | 3 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070092.1 | 3e-56 | protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 1e-39 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A067LD10 | 7e-55 | A0A067LD10_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_020375m | 2e-49 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 7e-37 | RAD-like 1 |
Publications ? help Back to Top | |||
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