PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00190.20
Common NameJCGZ_26379, LOC105648893
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 465aa    MW: 52247.8 Da    PI: 8.3279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00190.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.7e-14297342454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  Jcr4S00190.20 297 NHVEAERQRRERLNHRFYSLRSVVPTV-----SKMDKASLLADAVTYIKEL 342
                    799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.7E-4220205IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.69E-14292346No hitNo description
PROSITE profilePS5088817.149293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-18293356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-11297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17297355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-16299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSPSSSSSLK SFRKDSSSPL HHRLQFILQS RPECWLYAVF WQATKDATGS LVLSWADGSF  60
HGAKEFAAKA SNHNKFGFNP EKRKTTMINS NKEFPTLFSD EMDMDGLADV DVIDYEWFYT  120
VSVTRSYAVD RDGILSRAFG SGNFIWLTGD NELQLYDYCD RVKEARMHGI QTLVCISTCN  180
GVVEFGSSTL INEDWSLVQH CKSLFGVENS HQLQIPKNGN NASPSSSCFL DIGIFSDSHQ  240
KETCQEKKNE GETSIKRKKD GVSNSQQGGR TSSDSGSTYP CKKRSRKQSA GKETHLNHVE  300
AERQRRERLN HRFYSLRSVV PTVSKMDKAS LLADAVTYIK ELKAKVDELE TKQQAIIMSK  360
NNNNHNKLNN GNDIFRSFSS HRAKVIEVDV KILGSSEAMI RVLSPNVNHP AARLMDALRE  420
AECQVHHGSV SSIKDMLLQD VMVRVPDGLK DEETVRTAVL QKMQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-25122054192Transcription factor MYC3
4rqw_B1e-25122054192Transcription factor MYC3
4rs9_A1e-25122054192Transcription factor MYC3
4yz6_A1e-25122054192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302307RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090783.10.0transcription factor bHLH14
TrEMBLA0A067JI900.0A0A067JI90_JATCU; Uncharacterized protein
STRINGcassava4.1_024442m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-77bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]