PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00187.70 | ||||||||
Common Name | JCGZ_06645, LOC105635139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 25940.2 Da PI: 4.518 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.4 | 2.4e-18 | 6 | 118 | 1 | 107 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l pG+rF P+d+el v+yL +k++g+ ++ + ++++d+y + ePw k++ ++e ++yfF+k +k++++++r +r++ +g+W+ + Jcr4S00187.70 6 LLPGYRFIPNDKELYVDYLYPKITGQLSPVLQRiVPDCDLYGTeEPWMVWKRFGGDELgglgDLYFFTKLKKTNPRSSRVERSVGKGTWHGENTGV 101 579***********************977755549******9978****876655433444578**************************999999 PP NAM 91 evlskkgelvglkktLv 107 ++l ++ + g+k++L Jcr4S00187.70 102 PLLLEEIGQAGMKRSLR 118 999999999****9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-17 | 4 | 117 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.326 | 6 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-10 | 8 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDETLLLPGY RFIPNDKELY VDYLYPKITG QLSPVLQRIV PDCDLYGTEE PWMVWKRFGG 60 DELGGLGDLY FFTKLKKTNP RSSRVERSVG KGTWHGENTG VPLLLEEIGQ AGMKRSLRKK 120 DAFSVSSPGS KKRKLDEEGV ENSLVMEERM EDSSKKRKLH EEGVVVDSFI INEPMGFNMC 180 LSMDELMGYP QSSNGDDEYL DFHNWLAAAE SAVHGQETEQ SSIEDDAWG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 133 | RKKDAFSVSSPGSKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC775358 | 0.0 | KC775358.1 Jatropha curcas NAC transcription factor 080 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012073531.1 | 1e-152 | NAC domain-containing protein 41-like | ||||
TrEMBL | R4N5T0 | 1e-150 | R4N5T0_JATCU; NAC transcription factor 081 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 6e-10 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Entrez Gene | 105635139 |
Publications ? help Back to Top | |||
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