PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00168.120

Common Name

JCGZ_23120, LOC105647327

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

CO-like

Protein Properties

Length: 496aa MW: 54651.4 Da PI: 6.4321

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00168.120	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.3	1.2e-06	11	43	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++e+ + l+C+ ++ lC C ++ H+ Jcr4S00168.120 11 SVPCDFCSEQVAVLYCRADSAKLCLFCDQHVHS 43 678**************************9995 PP
2	zf-B_box	25.7	2.3e-08	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C++++++++++ C +++ lC++C H + H+++p+ Jcr4S00168.120 54 SQICDNCGSEPVSFRCGTDNLVLCQECDWDAHGScpvsasHDRTPI 99 579*************************999955889999988876 PP
3	CCT	64	4.6e-22	448	492	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++e Jcr4S00168.120 448 RGTAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASE 492 6789**************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.897	9	56	IPR000315	B-box-type zinc finger
SMART	SM00336	4.4E-12	9	56	IPR000315	B-box-type zinc finger
CDD	cd00021	8.69E-8	12	44	No hit	No description
PROSITE profile	PS50119	10.153	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.1E-6	55	99	IPR000315	B-box-type zinc finger
CDD	cd00021	9.20E-8	56	99	No hit	No description
SMART	SM00336	0.23	57	99	IPR000315	B-box-type zinc finger
Pfam	PF06203	2.0E-16	448	490	IPR010402	CCT domain
PROSITE profile	PS51017	14.882	448	490	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MGSPKSETKQ SVPCDFCSEQ VAVLYCRADS AKLCLFCDQH VHSANLLSRK HLRSQICDNC 60 GSEPVSFRCG TDNLVLCQEC DWDAHGSCPV SASHDRTPIE GFSGCPSALE LASKWGFDLD 120 EKKLDHPLIQ SWSGAGTQDL VMQIEPWAFK SCDGMSFQDL MVPNDKAFVY GNVNSVDMVT 180 ASKRHQSPCC GKYKQAIYKQ LVGLFKRNMM NGDTGGGDGG GESMMPVTPT RSGWQENVDT 240 VDFGNGNDGV IDAAGAGSTI PQQSFQEQTP YASLFMLPSQ MDLKPSGRVV PGDIMWDSNA 300 STHGTQIWDF NLGQLRTHEE SDQLEVAYDT SNAGFTIKNI GEFMKETSLS SAKMLGDMYQ 360 INCPITHDDM ALFNNNTNNP TASQGPETSE SNNLPVAKAS SESTFGKLKG SSTCRDIQFM 420 EEKILVRGDS MRTVPATKAD IELLAKNRGT AMQRYKEKKK TRRYDKHIRY ESRKARADTR 480 KRVKGRFVKA SEALDG

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MGSPKSETKQ SVPCDFCSEQ VAVLYCRADS AKLCLFCDQH VHSANLLSRK HLRSQICDNC  60
GSEPVSFRCG TDNLVLCQEC DWDAHGSCPV SASHDRTPIE GFSGCPSALE LASKWGFDLD  120
EKKLDHPLIQ SWSGAGTQDL VMQIEPWAFK SCDGMSFQDL MVPNDKAFVY GNVNSVDMVT  180
ASKRHQSPCC GKYKQAIYKQ LVGLFKRNMM NGDTGGGDGG GESMMPVTPT RSGWQENVDT  240
VDFGNGNDGV IDAAGAGSTI PQQSFQEQTP YASLFMLPSQ MDLKPSGRVV PGDIMWDSNA  300
STHGTQIWDF NLGQLRTHEE SDQLEVAYDT SNAGFTIKNI GEFMKETSLS SAKMLGDMYQ  360
INCPITHDDM ALFNNNTNNP TASQGPETSE SNNLPVAKAS SESTFGKLKG SSTCRDIQFM  420
EEKILVRGDS MRTVPATKAD IELLAKNRGT AMQRYKEKKK TRRYDKHIRY ESRKARADTR  480
KRVKGRFVKA SEALDG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088747.1	0.0	zinc finger protein CONSTANS-LIKE 15
TrEMBL	A0A067JHF9	0.0	A0A067JHF9_JATCU; Uncharacterized protein
STRING	cassava4.1_006085m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4737	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28050.1	1e-108	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Entrez Gene	105647327

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]