PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00167.130

Common Name

JCGZ_24658, LOC105631353

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 365aa MW: 40394.3 Da PI: 10.0777

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00167.130	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47	6.5e-15	71	158	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + + ++ +qCk++++ ++k+yk +k+ + + s++p+f++l+ Jcr4S00167.130 71 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYSKAAKTDIQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWPFFERLD 158 7***********************************84333334456778**************99997..67779****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.3E-26	69	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010431	Biological Process	seed maturation

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDDDEEIQSH ASAATGSPSP SPPNGRITVT VAAAPPSSQQ EQQSPQRINN SSLAIIPIQQ 60 PKTNGGGRED CWSEGATAVL IDAWGERYLE LSRGNLKQKH WKEVADIVSS REDYSKAAKT 120 DIQCKNRIDT VKKKYKLEKA KIAAGGGPSK WPFFERLDQL IGPTAKIPVT ATAAAASLSN 180 KVPVGIPVVG IRSGSSQYQF GKAQMKNNQI TKNQNAKAQF RKRNQVERES SSDEEEENFP 240 DSDDSLPPEK KPRVVQRGVN TKIGKEKKGW GNSIRMLTQA ILKFGEAYEQ AESVKLQQVV 300 EMEKARMKFA KELELQRMQF FMKTQMEISQ LKRGRKGGNG SNHLHSGNNL IHNHNANNNN 360 SDSDN

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDDDEEIQSH ASAATGSPSP SPPNGRITVT VAAAPPSSQQ EQQSPQRINN SSLAIIPIQQ  60
PKTNGGGRED CWSEGATAVL IDAWGERYLE LSRGNLKQKH WKEVADIVSS REDYSKAAKT  120
DIQCKNRIDT VKKKYKLEKA KIAAGGGPSK WPFFERLDQL IGPTAKIPVT ATAAAASLSN  180
KVPVGIPVVG IRSGSSQYQF GKAQMKNNQI TKNQNAKAQF RKRNQVERES SSDEEEENFP  240
DSDDSLPPEK KPRVVQRGVN TKIGKEKKGW GNSIRMLTQA ILKFGEAYEQ AESVKLQQVV  300
EMEKARMKFA KELELQRMQF FMKTQMEISQ LKRGRKGGNG SNHLHSGNNL IHNHNANNNN  360
SDSDN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00356	DAP	Transfer from AT3G14180	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068832.1	0.0	trihelix transcription factor ASIL2
Swissprot	Q9LJG8	1e-103	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A067L990	0.0	A0A067L990_JATCU; Uncharacterized protein
STRING	cassava4.1_009403m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7919	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	2e-56	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	105631353

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]