PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00154.50 | ||||||||
Common Name | JCGZ_23541, LOC105647867 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 24219.1 Da PI: 9.3901 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +r g+ R++k+c++rw +yl Jcr4S00154.50 14 KGPWTPEEDQILISYIQRYGHGNWRALPRQAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.6e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e ++++ + lG++ W+tIa++++ gRt++++k++w+++l Jcr4S00154.50 67 RGNFTDEEEETIIKLRQILGNR-WSTIAAKLP-GRTDNEIKNYWHSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.73 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-31 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.556 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-26 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.94E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVRIPCCENM GLKKGPWTPE EDQILISYIQ RYGHGNWRAL PRQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TDEEEETIIK LRQILGNRWS TIAAKLPGRT DNEIKNYWHS HLKKRFDEEK 120 YGSSSTGSSG NCSKKSKRTV KNNAIRSSEN VNISAGHDHA SAFSQQSSHD ELSSAFANVE 180 AVVDGLNTIS DTAFWYDIFM KTRNYSREVD GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034670 | 0.0 | KM034670.1 Jatropha curcas clone JcMYB050 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012089481.1 | 1e-159 | myb-related protein Myb4 | ||||
Swissprot | Q9LTC4 | 7e-74 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A067JLQ9 | 1e-158 | A0A067JLQ9_JATCU; MYB family protein | ||||
STRING | cassava4.1_033955m | 8e-90 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-74 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Entrez Gene | 105647867 |