PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00154.30 | ||||||||
Common Name | JCGZ_23543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 959aa MW: 107659 Da PI: 4.8382 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.6e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Jcr4S00154.30 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Jcr4S00154.30 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.2E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 7.54E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 1.4E-20 | 33 | 105 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.86E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 3.8E-58 | 370 | 621 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 959 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEAGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAADQWNSLS SQLTIEELEG KRRVDLEAQL RKQDIAKNKI AQRQDAPSAI 240 LQANKLNDPE TVRKRSKLML PAPQISDHEL EEIAKMGYAS DLLAGSEELT EGSGATRALL 300 ANYADTQRQG VTPLRTPQRT PAGKGDAIMM EAENLARLRE SQTPLLGGEN PELHPSDFSG 360 VTPKRREIQT PNPMLTPSAT PGGVGSTPRI GMTPSRDGYS FGVTPKGTPI RDELRINEDM 420 DMHDSAKLEQ RRQADLRKNL RSGLSNLPQP KNEYQIVIQP PPEDNEEPEE KIEEDMSDRL 480 AREKAEEEAR QQALLRKRSK VLQRELPRLP AASLELIRNS LLRADGDKSS FVPPTSIEQA 540 GEMIRKELLS LLEHDNAKYP LDEKPNKEKK KGAKRPANAP AASIPVIEDF EEEELKEADD 600 LIKEEANYIR VAMGHESESL DEFVEAHKTC LNDLMYFPTR SAYGLASVAG NVEKLTALQN 660 EFDSVKMRLE AEREKALRLE KKVNVLTQGY QTRAERQLLP PIESILKQLD TAGTELECFQ 720 ALQKQEQLAA SHRINGLWEE VQKQKELEQD LQRRYGDLVA QLERTQHIIN HYRAIAKQQE 780 EIDARNRALE LAENAAKPAA LPNSETSEPL PSNDFGNSTP VNSSDVDISE QKNSSDVDIS 840 EQKTNDAEDH VITSQEHDMD ADSEKEQTPM DVNLSNDVPT SVVSDGKNLN DESADGNAGE 900 IAEVVKDGAV AEDQQNIVEA TNLDDDVTKQ GGSSEDGREK LVKAEENAAN TEHDGGRES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 763 | 3 | 796 | Cell division cycle 5-like protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF022007 | 0.0 | KF022007.1 UNVERIFIED: Jatropha curcas cell division cycle 5-like (CDC5) mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012089321.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A067JUS2 | 0.0 | A0A067JUS2_JATCU; MYB family protein | ||||
STRING | cassava4.1_000851m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4072 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 105647737 |
Publications ? help Back to Top | |||
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