PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00151.130

Common Name

JCGZ_20417, LOC105645635

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Nin-like

Protein Properties

Length: 983aa MW: 107158 Da PI: 5.4006

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00151.130	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.4e-29	574	624	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Jcr4S00151.130 574 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 624 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.734	563	644	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-26	577	624	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.48E-23	879	971	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-26	887	969	No hit	No description
SMART	SM00666	7.9E-24	887	969	IPR000270	PB1 domain
PROSITE profile	PS51745	24.674	887	969	IPR000270	PB1 domain
CDD	cd06407	3.89E-36	888	968	No hit	No description
Pfam	PF00564	1.8E-16	888	968	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MPEQEEDKSK GNQPPVVAGV GGGGVGGGVR GETLMDLDLD LESSWPLDQI SFLSNPLSPL 60 LLSSSDQPCS PLWAFSDTDD ERLVASASSH ATVPPLPAAA GLRLSDYPIF VTCNTASVNE 120 NPTENDDKRK LPSPLLGLMP IDNPDGYCII KERMTQALRN FKDSTEQHVL AQVWAPVKNG 180 VDGESDGELG LPGRVFRLKL PEWSPNVQYY STKEYSRRDH ALCYNVQGTL ALPVFEPSGQ 240 YCVGVLELIM TSQKINYGPE VDKVCKALEA VNLKSSEILD HPDVYLALLL NQICNEGRKN 300 ALAEILEILT AVCETHKLAL AQTWVPCMHR SVLAYGGGVK KSCTSFDGSC NGQVCMSTTD 360 VAFYVVDPHM WGFREACLEH HLQKGQGVAG RAFSSHSACF CQDITQFCKT EYPLVHYARM 420 FELTSCFAIC LHSSHTGDDE YVLEFFFPSS ISDIYEQKAL LGSMLATMKQ HFQSLKVASG 480 MNLEEEEGFI EIVRTSMTGR LDLGLECIRI PQSPKTPPNT NTLSEGGHMA QIDSIRHQLV 540 VDLAVVDNGG KFPTTHPDNK VNKRPSERKR GKTEKSISLE VLQQYFAGSL KDAAKSLGVC 600 PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG AEGAFDLTPL ATSPLPVAVG 660 SISWPSNLNG CNQRNSPISK SPEPNGERNG SPLCKTPESN VHAGVDGQLL GGGILSHEEL 720 VLQNRFSPEL GQCSNRSKAG SGSREESTGT PTSHGSCQGS PANDSAPVKD LTGSPVHEQC 780 NKVGCASELA FQPKRELNLS AAYTIPDALV VTKAQEPFGE MLIEDAGSSK DLRNLCPAVA 840 DAILDERVPE SSWVPESGWV NHQCPDLSMA AIEHAMPHAT ARQEMRSITI KATYKEDIIR 900 FRISLSSGIV ELKEEVAKRL KLEVGTFDIK YLDDDQEWVL IACNADLQEC IDVSRSSGCN 960 IIRLSVHDVN ALLGSSCEST GEL

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MPEQEEDKSK GNQPPVVAGV GGGGVGGGVR GETLMDLDLD LESSWPLDQI SFLSNPLSPL  60
LLSSSDQPCS PLWAFSDTDD ERLVASASSH ATVPPLPAAA GLRLSDYPIF VTCNTASVNE  120
NPTENDDKRK LPSPLLGLMP IDNPDGYCII KERMTQALRN FKDSTEQHVL AQVWAPVKNG  180
VDGESDGELG LPGRVFRLKL PEWSPNVQYY STKEYSRRDH ALCYNVQGTL ALPVFEPSGQ  240
YCVGVLELIM TSQKINYGPE VDKVCKALEA VNLKSSEILD HPDVYLALLL NQICNEGRKN  300
ALAEILEILT AVCETHKLAL AQTWVPCMHR SVLAYGGGVK KSCTSFDGSC NGQVCMSTTD  360
VAFYVVDPHM WGFREACLEH HLQKGQGVAG RAFSSHSACF CQDITQFCKT EYPLVHYARM  420
FELTSCFAIC LHSSHTGDDE YVLEFFFPSS ISDIYEQKAL LGSMLATMKQ HFQSLKVASG  480
MNLEEEEGFI EIVRTSMTGR LDLGLECIRI PQSPKTPPNT NTLSEGGHMA QIDSIRHQLV  540
VDLAVVDNGG KFPTTHPDNK VNKRPSERKR GKTEKSISLE VLQQYFAGSL KDAAKSLGVC  600
PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG AEGAFDLTPL ATSPLPVAVG  660
SISWPSNLNG CNQRNSPISK SPEPNGERNG SPLCKTPESN VHAGVDGQLL GGGILSHEEL  720
VLQNRFSPEL GQCSNRSKAG SGSREESTGT PTSHGSCQGS PANDSAPVKD LTGSPVHEQC  780
NKVGCASELA FQPKRELNLS AAYTIPDALV VTKAQEPFGE MLIEDAGSSK DLRNLCPAVA  840
DAILDERVPE SSWVPESGWV NHQCPDLSMA AIEHAMPHAT ARQEMRSITI KATYKEDIIR  900
FRISLSSGIV ELKEEVAKRL KLEVGTFDIK YLDDDQEWVL IACNADLQEC IDVSRSSGCN  960
IIRLSVHDVN ALLGSSCEST GEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012086674.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A067JMR7	0.0	A0A067JMR7_JATCU; Uncharacterized protein
STRING	XP_002518861.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Entrez Gene	105645635

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]