PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00150.230
Common NameJCGZ_20635
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 464aa    MW: 52647.4 Da    PI: 8.2112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00150.230genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.6e-145095147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g WT+ Ed ll + v+++ g++Wk+Ia++++ gRt  qc  rw+ +
   Jcr4S00150.230 50 KGHWTEAEDYLLMESVREFHGRNWKKIAECLP-GRTVSQCFTRWNRV 95
                     789*****************************.***********986 PP
2Myb_DNA-binding53.17.2e-17102148148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ +++ v+++G++ W+ Ia+ ++ gR + qc++rw+++l
   Jcr4S00150.230 102 KGAWTKEEDDCIIESVRKYGPKKWSVIAKFLP-GRLGRQCRERWYNHL 148
                      79******************************.*************97 PP
3Myb_DNA-binding51.72e-16154196145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+eE++ l+++++ +G++ W+ Ia+ +  gRt++ +k++w+
   Jcr4S00150.230 154 RTSWTEEEELTLIHYHETYGNK-WTEIAKFLR-GRTDNAIKNHWN 196
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6734596IPR017930Myb domain
SMARTSM007171.0E-124998IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-1449102IPR009057Homeodomain-like
PfamPF002492.4E-125095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2151108IPR009057Homeodomain-like
CDDcd001673.35E-115396No hitNo description
PROSITE profilePS5129428.60197152IPR017930Myb domain
SuperFamilySSF466891.34E-30100195IPR009057Homeodomain-like
SMARTSM007171.0E-16101150IPR001005SANT/Myb domain
PfamPF002493.8E-16102148IPR001005SANT/Myb domain
CDDcd001676.20E-15104148No hitNo description
Gene3DG3DSA:1.10.10.602.3E-24109156IPR009057Homeodomain-like
SMARTSM007176.2E-16153201IPR001005SANT/Myb domain
PROSITE profilePS5129420.696153203IPR017930Myb domain
PfamPF002495.7E-15154196IPR001005SANT/Myb domain
CDDcd001672.89E-12156196No hitNo description
Gene3DG3DSA:1.10.10.604.7E-22157204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MVMKVKKEEE FYNVDLGDQV IDAQPFSVYF GTCRTAIPRR VTGPARQSTK GHWTEAEDYL  60
LMESVREFHG RNWKKIAECL PGRTVSQCFT RWNRVLNPAV VKGAWTKEED DCIIESVRKY  120
GPKKWSVIAK FLPGRLGRQC RERWYNHLDP AIRRTSWTEE EELTLIHYHE TYGNKWTEIA  180
KFLRGRTDNA IKNHWNCIMK KKLNSNSPAC AMDSCTDGSL NFCCCITSPD SMEVREERQS  240
FDETVSSDRK MRLKNIAEIS TSELPRGIGN GGHDQLEAKY GAAGTCGSSV EVDNKLMNLL  300
HFDDRGARTC GAAIEDRINN VTHDVEPRDL IPGLDGTELP TGYHHFLHTS TQFLSATPTN  360
VRRGSFVNCN SPESILRNSA RTFKNTPSII RKRTYRKTGL DNSPDVTHTP LWKFSPTSDG  420
EDANTADILN LKQGVLSFFG KPGSSFAVKS LKRQLESAFD MERD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-57502036159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-57502036159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346420.0KM034642.1 Jatropha curcas clone JcMYB022 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087216.20.0transcription factor MYB3R-3
TrEMBLA0A067K1010.0A0A067K101_JATCU; MYB family protein
STRINGXP_002509747.11e-164(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-75Homeodomain-like protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]