PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00148.10
Common NameJCGZ_01234, LOC105648776
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 260aa    MW: 28386.7 Da    PI: 5.1004
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00148.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.4e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v+q+G+++W++I+  ++ gR++k+c++rw + 
    Jcr4S00148.10 13 KGSWSPQEDANLIKLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 58
                     799*****************************.***********985 PP

2Myb_DNA-binding551.9e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ed ++v+a++ +G++ W+tIar ++ gRt++ +k++w++ 
    Jcr4S00148.10  67 PFSPAEDAIIVQAHAIHGNK-WATIARLLP-GRTDNAIKNHWNST 109
                      79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.289863IPR017930Myb domain
SuperFamilySSF466893.33E-3010106IPR009057Homeodomain-like
SMARTSM007173.1E-161261IPR001005SANT/Myb domain
PfamPF002492.0E-181358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-241466IPR009057Homeodomain-like
CDDcd001671.16E-151557No hitNo description
PROSITE profilePS5129421.98564114IPR017930Myb domain
SMARTSM007179.4E-1564112IPR001005SANT/Myb domain
CDDcd001671.30E-1267110No hitNo description
PfamPF002491.7E-1467109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2367113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGSFSGCGAD RIKGSWSPQE DANLIKLVEQ HGPRNWSLIS TGIPGRSGKS CRLRWCNQLS  60
PEVQHRPFSP AEDAIIVQAH AIHGNKWATI ARLLPGRTDN AIKNHWNSTL RRKRAAELSS  120
ASSEANSVMK RPCLDVSTES GSESGVKRQC LGAPPEDSSF DGEAGIVEPE TSLTLSPPGD  180
GFVRTEVGEK VKEVAVKGGE QDVDRQMVGE EEEEEEETCG LQIEETCLLT IMQRMIATEV  240
RSYIDRLRSK NGFAGPNADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-39121133104MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-391211357158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-391211357158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-39121133104C-Myb DNA-Binding Domain
1msf_C1e-39121133104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346250.0KM034625.1 Jatropha curcas clone JcMYB005 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090668.10.0transcription factor MYB25
SwissprotO231605e-55MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A067LKB30.0A0A067LKB3_JATCU; MYB family protein
STRINGcassava4.1_022961m1e-123(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-55myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]