PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00128.140
Common NameJCGZ_19888, LOC105644107, WRKY06
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 542aa    MW: 59290.9 Da    PI: 8.5402
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00128.140genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33246302259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK++kgse+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+g Hnh+
  Jcr4S00128.140 246 DDGYNWRKYGQKPIKGSEYPRSYYKCTHPNCPVKKKVERSS-DGQITEIIYKGLHNHD 302
                     8****************************************.***************7 PP
2WRKY106.61.3e-33428486159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a dpk+v++tYeg+Hnh+
  Jcr4S00128.140 428 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSTGCNVRKHVERAAADPKAVITTYEGKHNHD 486
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.857240304IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-30242305IPR003657WRKY domain
SuperFamilySSF1182906.41E-27244304IPR003657WRKY domain
SMARTSM007741.1E-38245303IPR003657WRKY domain
PfamPF031064.1E-26246302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-37413488IPR003657WRKY domain
SuperFamilySSF1182901.44E-29420488IPR003657WRKY domain
PROSITE profilePS5081138.572423488IPR003657WRKY domain
SMARTSM007745.0E-40428487IPR003657WRKY domain
PfamPF031062.7E-26429486IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAEKQDPTSS KPTTAIAAPT RPTITLPPRP AMDTLFTGGL SPGPMTLVSS FFSDNFPDSD  60
CRSFSQLLAG AMVSPIARPA FFTDNSLANN NISTSAVSSL KQDGVGNNSN LGFKQSRPVN  120
LVLTPSPLFT VPPGLSPSGL LSSPGFFSTP QSPFGMSHQQ ALAQVTAQAA FAAQSQMHLQ  180
AQYQPTSLAS STELLTRELS LNPGETSQQQ MLPSTSEPPS STVESTDVSH SDRRQQPPLA  240
VDKPSDDGYN WRKYGQKPIK GSEYPRSYYK CTHPNCPVKK KVERSSDGQI TEIIYKGLHN  300
HDQPQPNKRA KDGSDPTGSI SSQAKPEIGS QAQDGKMYKL SETRPAHSFQ GRDQESTQAD  360
PIELTGSSDS EEAGDRATGA EERDNDERNP KRRQCRHTDV QTSEVVLPHK TVTEPKIIVQ  420
TRSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTSTGCN VRKHVERAAA DPKAVITTYE  480
GKHNHDVPAA RNSSHNTANN NALQLKPQKL MAEKHSLLKG MDFGNSDQRP VLLRLKEEEI  540
TV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-40246489878Probable WRKY transcription factor 4
2lex_A3e-40246489878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700080.0KC470008.1 Jatropha curcas WRKY transcription factor 06 (WRKY06) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084758.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-148WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM9TIP90.0M9TIP9_JATCU; WRKY transcription factor 06
STRINGcassava4.1_005605m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-112WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  5. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]