PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00121.120

Common Name

JCGZ_12017

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 314aa MW: 35557.8 Da PI: 7.501

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00121.120	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.7	1.2e-13	244	286	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ +Le +v L + N+ Lkk Jcr4S00121.120 244 RRQKRMIKNRESAARSRARKQAYTNKLEHEVFHLRETNTWLKK 286 69************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-9	240	296	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.588	242	286	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.0E-12	244	286	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.63E-10	244	286	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.8E-13	244	286	No hit	No description
CDD	cd14707	4.77E-21	244	289	No hit	No description
PROSITE pattern	PS00036	0	247	262	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MYMDNRTMVS PNRAQEHQYN LTIDQLGKPL NTMKLDELLK NVISAEDSQF LQNINPSSSS 60 SSSSSSSASS FLGNFDLNGK KKVTIDEVWK DIILNQENVN AIENQSRIHQ ETTLEDFLVR 120 SGVTNIGNNQ NGLFNIPHHH QPIVGMHDPM ADWLQLQMAA VQRQQMSVLD SSTNFHASES 180 SSSVYHDKSS IIGHDHGGYG ENQMGMTIPV SAISTTASSE SQAVVIADKK RQYSDEIMEK 240 TIERRQKRMI KNRESAARSR ARKQAYTNKL EHEVFHLRET NTWLKKFKEV EMLLSSDLTP 300 TPRYQLRRTS SASI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078352.2	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A067KKF2	0.0	A0A067KKF2_JATCU; Uncharacterized protein
STRING	cassava4.1_027338m	1e-108	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	4e-40	ABA-responsive element binding protein 3

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]