PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00121.110
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bZIP
Protein Properties Length: 385aa    MW: 43924.8 Da    PI: 9.3348
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00121.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.88.8e-1274123356
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                     ++k++rr+++NReAAr+sR RKka++++Le    +L +  +    ele+ +++v
  Jcr4S00121.110  74 ADKVQRRLAQNREAARKSRMRKKAYVQQLESSRVKLVQLEQ----ELERARQQV 123
                     79****************************86666655553....555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-472129IPR004827Basic-leucine zipper domain
PfamPF001701.7E-874115IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.05974118IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.62E-776123No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-876123No hitNo description
PROSITE patternPS0003607994IPR004827Basic-leucine zipper domain
PfamPF141445.3E-30187263IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSSSSTQLSA LRGMGIYEPF HQISSWGDTF RGNDNLNIGP STIMQVDDGL NKGEYVSQES  60
MEPSRSDQEA NRPADKVQRR LAQNREAARK SRMRKKAYVQ QLESSRVKLV QLEQELERAR  120
QQVCECLTAG FVCGQRTRCN SFIAWKYKFR NLRRSNFRLM ALQIVATVGI TTFEIEYGHW  180
VEEQHKHVSE LRNALQAHIT DIELRILVEN GLNHYNNLFR MKADAAKADV FYLISGKWRT  240
SVERFFQWIG GFRPSELLNV LMSQLEPLTD QQMVDVCNLR QSSQQAEDAL SQGIDKLQQT  300
LAHSIAADIT SGGSYRAQMA AAIEKLEALE GFVNQADHLR QQTLQQMSRI LTTRQAARGL  360
LALGEYFHRL RALSSLWAAR PREPA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078125.10.0transcription factor TGA3
RefseqXP_012078126.10.0transcription factor TGA3
RefseqXP_012078127.10.0transcription factor TGA3
RefseqXP_020536921.10.0transcription factor TGA3
RefseqXP_020536922.10.0transcription factor TGA3
SwissprotQ93ZE21e-158TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A067K9480.0A0A067K948_JATCU; Uncharacterized protein
STRINGXP_002513852.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-152bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]