PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00113.50
Common NameJCGZ_16731, LOC105628675
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 361aa    MW: 39817.1 Da    PI: 8.3777
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00113.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11289334655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L++l P+     +k  + a++L +AveYIk+Lq
  Jcr4S00113.50 289 SIAERVRRTRISERMRKLQDLFPNM----DKQTNTADMLDLAVEYIKDLQ 334
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.462283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-15286346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-11287338No hitNo description
Gene3DG3DSA:4.10.280.102.2E-14288344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8289334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDLNHHHYRQ EQQQHSSGLT RYRSAPSSFL DSLVSVNAGH GGAGVEEFGE RPIMKQEMED  60
SSQMIYQSLP VNNLANNVNP VNVNNNSMDN SFGVMNSMAP ENSSQASKRN NGNGSNLVRQ  120
SSSPAGFFSN LGVDSGFTVT KDVGSFQVSN GLNREASPST SRLSNHVNFS SGHLLPQIPE  180
IGDENPGASS PECNTGKRQY MNFANDSWDD CSSNDFKRLR NNEGNMFSGL SILENENGNS  240
GNRLTGLTHH LSLPKTAAEM ATIEKFLQFQ GSVPCKVRAK RGCATHPRSI AERVRRTRIS  300
ERMRKLQDLF PNMDKQTNTA DMLDLAVEYI KDLQKQVKTL TDTRAKCTCP SKQKQYSNAS  360
A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065523.20.0transcription factor bHLH130 isoform X1
RefseqXP_012065524.10.0transcription factor bHLH130 isoform X2
RefseqXP_020532871.10.0transcription factor bHLH130 isoform X2
TrEMBLA0A067LGX80.0A0A067LGX8_JATCU; Uncharacterized protein
STRINGcassava4.1_007893m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-75bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]