PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00112.130
Common NameJCGZ_18971, LOC105643515
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family CAMTA
Protein Properties Length: 860aa    MW: 97974.4 Da    PI: 7.5339
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00112.130genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.49.5e-52381543118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl+++ei+aiL n++ + +  ++ + pksg+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+n+tf r
  Jcr4S00112.130  38 EEaRTRWLRPNEIHAILCNYKYFVINVKPVHLPKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNQTFVR 132
                     4559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     rcywlL+++le+ivlvhy+e++
  Jcr4S00112.130 133 RCYWLLDKTLEHIVLVHYRETQ 154
                     *******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.5433159IPR005559CG-1 DNA-binding domain
SMARTSM010763.1E-7436154IPR005559CG-1 DNA-binding domain
PfamPF038596.6E-4639152IPR005559CG-1 DNA-binding domain
PROSITE profilePS5029713.735529619IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-14531612IPR020683Ankyrin repeat-containing domain
CDDcd002042.86E-11532607No hitNo description
SuperFamilySSF484032.34E-13536613IPR020683Ankyrin repeat-containing domain
PfamPF127963.3E-6542608IPR020683Ankyrin repeat-containing domain
SMARTSM002484.3E-6548577IPR002110Ankyrin repeat
PROSITE profilePS5008812.048548580IPR002110Ankyrin repeat
SMARTSM002481800587616IPR002110Ankyrin repeat
SMARTSM0001547711733IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.254712741IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0075734756IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.091735759IPR000048IQ motif, EF-hand binding site
PfamPF006120.0066737756IPR000048IQ motif, EF-hand binding site
SMARTSM0001511814836IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187816844IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MDSAMLGRLV SSEIHGFHTL QATGPCYMAD LDFGNIMEEA RTRWLRPNEI HAILCNYKYF  60
VINVKPVHLP KSGTIVLFDR KKLRNFRKDG HNWKKKKDGK TVKEAHEHLK VGNEERIHVY  120
YAHGEDNQTF VRRCYWLLDK TLEHIVLVHY RETQEFQGSP VTPMNSNSSS ISDQSPWLIS  180
EEFDSGAGNA YHTGEKEHLE ATGPTDNLTV RNHEMKLHEI NTLDWDELVM NDPNNSPMPK  240
GVEDGIVGFD RQNQIAVNGS GSSLPIYNLS AEISSLDNLT EVISRSNNAH FNSPGDTYSK  300
STSVQINSNA QNKDSIVPGT GDSLDLLVND GLQSQDSFGR WINSIIAESS GSVDNPLLES  360
SISSGHDSFT AIDQLQSFVP EQMFVITDIS HTWSFSTETT KILVTGYFHE QYLHLTKSNL  420
YRSPLHHPVD SSKDKADPLV SSEDKPNWEE FKLKMSLAFL LSSTSKSLDV LTSKVSPTAL  480
KEAKKFAHKI SDISNTWAYL MKSIEDNRVP FPQAKDVLFE LTLKNMLKEW LLERVIQGCL  540
SLDFRDKRGW TALHWAAYYG REKMVAVLLS AGAKPNLVTD PTSENPGGRT AADLAYENGY  600
DGLAAYLSEK SLVAHFKDMS IAGNASGMLQ LSAAETVNSE NLNEEDLYLK DTLAAYQTAA  660
DAAARIQAAF REHSFKIRTK AVEFANPEDE ARNIIAAMKI QHAFRNFDTR KKMAAAARIQ  720
FRFRTWKMRK EFLNMRRQAV RIQAAFRGFQ VRRQYRKIVW SVGVVEKAIL RWRLKRKGFR  780
GLHVNPVETV EYGRQESDPE EDFYKASRKQ AEERVERSVV RVQAMFRSKK AQEEYRRMKL  840
AHNQAELDYE ELRDHRYSNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17996RKKLRNFRKDGHNWKKKK
28095KKLRNFRKDGHNWKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084038.10.0calmodulin-binding transcription activator 5 isoform X1
RefseqXP_020538675.10.0calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A067JV900.0A0A067JV90_JATCU; Uncharacterized protein
STRINGXP_002519198.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]