PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00112.130 | ||||||||
Common Name | JCGZ_18971, LOC105643515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | CAMTA | ||||||||
Protein Properties | Length: 860aa MW: 97974.4 Da PI: 7.5339 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 165.4 | 9.5e-52 | 38 | 154 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl+++ei+aiL n++ + + ++ + pksg+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+n+tf r Jcr4S00112.130 38 EEaRTRWLRPNEIHAILCNYKYFVINVKPVHLPKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNQTFVR 132 4559******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le+ivlvhy+e++ Jcr4S00112.130 133 RCYWLLDKTLEHIVLVHYRETQ 154 *******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.54 | 33 | 159 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.1E-74 | 36 | 154 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.6E-46 | 39 | 152 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS50297 | 13.735 | 529 | 619 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.8E-14 | 531 | 612 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.86E-11 | 532 | 607 | No hit | No description |
SuperFamily | SSF48403 | 2.34E-13 | 536 | 613 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.3E-6 | 542 | 608 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 4.3E-6 | 548 | 577 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.048 | 548 | 580 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1800 | 587 | 616 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 47 | 711 | 733 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.254 | 712 | 741 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0075 | 734 | 756 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.091 | 735 | 759 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0066 | 737 | 756 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 11 | 814 | 836 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.187 | 816 | 844 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 860 aa Download sequence Send to blast |
MDSAMLGRLV SSEIHGFHTL QATGPCYMAD LDFGNIMEEA RTRWLRPNEI HAILCNYKYF 60 VINVKPVHLP KSGTIVLFDR KKLRNFRKDG HNWKKKKDGK TVKEAHEHLK VGNEERIHVY 120 YAHGEDNQTF VRRCYWLLDK TLEHIVLVHY RETQEFQGSP VTPMNSNSSS ISDQSPWLIS 180 EEFDSGAGNA YHTGEKEHLE ATGPTDNLTV RNHEMKLHEI NTLDWDELVM NDPNNSPMPK 240 GVEDGIVGFD RQNQIAVNGS GSSLPIYNLS AEISSLDNLT EVISRSNNAH FNSPGDTYSK 300 STSVQINSNA QNKDSIVPGT GDSLDLLVND GLQSQDSFGR WINSIIAESS GSVDNPLLES 360 SISSGHDSFT AIDQLQSFVP EQMFVITDIS HTWSFSTETT KILVTGYFHE QYLHLTKSNL 420 YRSPLHHPVD SSKDKADPLV SSEDKPNWEE FKLKMSLAFL LSSTSKSLDV LTSKVSPTAL 480 KEAKKFAHKI SDISNTWAYL MKSIEDNRVP FPQAKDVLFE LTLKNMLKEW LLERVIQGCL 540 SLDFRDKRGW TALHWAAYYG REKMVAVLLS AGAKPNLVTD PTSENPGGRT AADLAYENGY 600 DGLAAYLSEK SLVAHFKDMS IAGNASGMLQ LSAAETVNSE NLNEEDLYLK DTLAAYQTAA 660 DAAARIQAAF REHSFKIRTK AVEFANPEDE ARNIIAAMKI QHAFRNFDTR KKMAAAARIQ 720 FRFRTWKMRK EFLNMRRQAV RIQAAFRGFQ VRRQYRKIVW SVGVVEKAIL RWRLKRKGFR 780 GLHVNPVETV EYGRQESDPE EDFYKASRKQ AEERVERSVV RVQAMFRSKK AQEEYRRMKL 840 AHNQAELDYE ELRDHRYSNF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 96 | RKKLRNFRKDGHNWKKKK |
2 | 80 | 95 | KKLRNFRKDGHNWKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084038.1 | 0.0 | calmodulin-binding transcription activator 5 isoform X1 | ||||
Refseq | XP_020538675.1 | 0.0 | calmodulin-binding transcription activator 5 isoform X1 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A067JV90 | 0.0 | A0A067JV90_JATCU; Uncharacterized protein | ||||
STRING | XP_002519198.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4288 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Entrez Gene | 105643515 |
Publications ? help Back to Top | |||
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