PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00108.250
Common NameJCGZ_02293, LOC105632228
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23826.6 Da    PI: 4.8714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00108.250genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14.1e-222769749
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      r+vtfskR+ngi+ KA ELS+LC+a+vavi+fs++gk++ +
  Jcr4S00108.250 27 NSRYVTFSKRKNGIFRKATELSTLCGADVAVILFSEHGKVFSF 69
                    569*************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-281372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.4411373IPR002100Transcription factor, MADS-box
CDDcd002651.96E-311481No hitNo description
SuperFamilySSF554552.35E-261483IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-191535IPR002100Transcription factor, MADS-box
PfamPF003198.8E-232269IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-193550IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-195071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDITTNQQRK TSKGRQKIEI MKVEKINSRY VTFSKRKNGI FRKATELSTL CGADVAVILF  60
SEHGKVFSFG NPDVDEVLDR YIAEIEEIDN NCNLLESSSS SSATETEQEQ EYKKSLNRLA  120
EMKKAVDVIR NETDRKNNGE FWWNLPIHNK EKEELEGYKE SLEELKKNVL TKIDEMASHN  180
ASGETRIINQ FIEGQNDGLE AGFNFEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-151497287MEF2 CHIMERA
6byy_B2e-151497287MEF2 CHIMERA
6byy_C2e-151497287MEF2 CHIMERA
6byy_D2e-151497287MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069939.11e-151agamous-like MADS-box protein AGL61
TrEMBLA0A067L7231e-150A0A067L723_JATCU; Uncharacterized protein
STRINGXP_002534006.13e-80(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-26AGAMOUS-like 62
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]