PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00108.20 | ||||||||
Common Name | JCGZ_20361, LOC105646019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 26631.7 Da PI: 8.6008 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.2e-20 | 13 | 66 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +R++f++eq++ Le +Fe ++ p a+ +++LA++lgL+ rqV++WFqNrRa+ k Jcr4S00108.20 13 NRRRFSDEQIKFLEFMFEAESRPEAQIKQQLANELGLQPRQVSIWFQNRRARLK 66 799*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 106.3 | 2.3e-34 | 13 | 104 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+s+eq+k+LE +Fe+e++ e + K++la+eLglqprqv +WFqnrRAR ktkq+E++y++Lk+++dal+++ e+L++e+++L +lk+ Jcr4S00108.20 13 NRRRFSDEQIKFLEFMFEAESRPEAQIKQQLANELGLQPRQVSIWFQNRRARLKTKQVEREYNRLKASHDALASRLESLKRENQSLLIQLKK 104 689***********************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.24E-18 | 7 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.929 | 8 | 68 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.9E-17 | 10 | 72 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-17 | 13 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 13 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.54E-14 | 14 | 69 | No hit | No description |
PRINTS | PR00031 | 2.1E-5 | 39 | 48 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 43 | 66 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.1E-5 | 48 | 64 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-13 | 68 | 107 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDRSMQPTSG NANRRRFSDE QIKFLEFMFE AESRPEAQIK QQLANELGLQ PRQVSIWFQN 60 RRARLKTKQV EREYNRLKAS HDALASRLES LKRENQSLLI QLKKLKNVQA RQQENKICGL 120 EQTESCKEQR PENRGPSSDS KEKLGQLFAG CSCKEETISS KEETRSSKEE TLSSNQDSRN 180 IGCSREGTKI LNHLTESKDG SMTSSDWHRF ASNYLLDEST CSSQWWEFLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 68 | RRARLKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087179.1 | 1e-168 | homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A067JZ10 | 1e-167 | A0A067JZ10_JATCU; Uncharacterized protein | ||||
STRING | Gorai.008G258900.1 | 3e-61 | (Gossypium raimondii) | ||||
STRING | POPTR_0003s14700.1 | 6e-62 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16057 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-40 | homeobox 7 |
Link Out ? help Back to Top | |
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Entrez Gene | 105646019 |
Publications ? help Back to Top | |||
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