PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00100.100

Common Name

GRAS32, JCGZ_11343, LOC105640240

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 512aa MW: 57225.1 Da PI: 6.4258

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00100.100	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.3	5.2e-113	140	511	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykal.ppsetseknsseelaalklfsevsPilkf 93 lv+lL++cAeav+ +d++ a+alL++l+ a g+++qR+a++f+++La rl+ ++ +++ + p+ + + s+++ al+l ++++P ++f Jcr4S00100.100 140 LVQLLIACAEAVACRDKSHASALLSELRSSALVFGSSFQRVASCFVQGLADRLSLVQPlGTVGFVvPMMNIMDIASDKKEEALRLVYDICPHIQF 234 689************************************************9844413333332444444445999999********** PP GRAS 94 shltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 +h++aN+ Ilea+ege+ vH++D++++ +G QW L+q+La+R+++ p +lRiTgvg + +++g+ L ++A+ lg+++ef+v v+ Jcr4S00100.100 235 GHFVANSSILEAFEGESFVHVVDLGMTlglpHGHQWRHLIQSLANRAGKLPsRLRITGVGL----CVGRFQTIGDELVEYAKDLGINLEFSV-VE 324 *******************98873333788*********887769****....***********************9.7 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 ++le+l+ ++++v +gE+++Vn++lqlh +++es + +vL+++ slsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lpr Jcr4S00100.100 325 SNLENLHRDDIKVYEGEVVVVNSILQLHCVVKESRGALN---SVLQIIHSLSPKLLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPRY 416 *****************************88877777...8************************************************ PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 + r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++ + +qak l k k dgy+v ee+g+lvlgWk++p+v++S+ Jcr4S00100.100 417 DTRRAKMEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MLAQAKQWLGKNKvCDGYTVVEEKGCLVLGWKSKPIVAASC 509 **********************************************97..6789*****9************************* PP GRAS 373 Wr 374 W+ Jcr4S00100.100 510 WK 511 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.372	114	492	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-110	140	511	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MAHHLFSSEL FDEDTIHRMN SLALSLSDMA YFPYPYLPTL ENNACISSDE SREHKRIKRT 60 LSFAESTGSN SGFYSVGGTG DIDSSISRSN STNSLNSFRM HHLRDHIKSY TQRFLAAEAI 120 EEAEEGENEE DGNNADGVRL VQLLIACAEA VACRDKSHAS ALLSELRSSA LVFGSSFQRV 180 ASCFVQGLAD RLSLVQPLGT VGFVVPMMNI MDIASDKKEE ALRLVYDICP HIQFGHFVAN 240 SSILEAFEGE SFVHVVDLGM TLGLPHGHQW RHLIQSLANR AGKLPSRLRI TGVGLCVGRF 300 QTIGDELVEY AKDLGINLEF SVVESNLENL HRDDIKVYEG EVVVVNSILQ LHCVVKESRG 360 ALNSVLQIIH SLSPKLLVLV EQDSSHNGPF FLGRFMEALH YYSAIFDSLD AMLPRYDTRR 420 AKMEQFYFAE EIKNIVSCEG PARVERHERV DQWRRRMSRA GFQAAPIKML AQAKQWLGKN 480 KVCDGYTVVE EKGCLVLGWK SKPIVAASCW KC

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MAHHLFSSEL FDEDTIHRMN SLALSLSDMA YFPYPYLPTL ENNACISSDE SREHKRIKRT  60
LSFAESTGSN SGFYSVGGTG DIDSSISRSN STNSLNSFRM HHLRDHIKSY TQRFLAAEAI  120
EEAEEGENEE DGNNADGVRL VQLLIACAEA VACRDKSHAS ALLSELRSSA LVFGSSFQRV  180
ASCFVQGLAD RLSLVQPLGT VGFVVPMMNI MDIASDKKEE ALRLVYDICP HIQFGHFVAN  240
SSILEAFEGE SFVHVVDLGM TLGLPHGHQW RHLIQSLANR AGKLPSRLRI TGVGLCVGRF  300
QTIGDELVEY AKDLGINLEF SVVESNLENL HRDDIKVYEG EVVVVNSILQ LHCVVKESRG  360
ALNSVLQIIH SLSPKLLVLV EQDSSHNGPF FLGRFMEALH YYSAIFDSLD AMLPRYDTRR  420
AKMEQFYFAE EIKNIVSCEG PARVERHERV DQWRRRMSRA GFQAAPIKML AQAKQWLGKN  480
KVCDGYTVVE EKGCLVLGWK SKPIVAASCW KC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-60	147	510	26	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405290	0.0	KM405290.1 Jatropha curcas GRAS32 protein (GRAS32) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079895.1	0.0	DELLA protein RGL1
TrEMBL	A0A067K4B2	0.0	A0A067K4B2_JATCU; GRAS32 protein
STRING	XP_002511245.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-76	RGA-like 1

Link Out ? help Back to Top
Entrez Gene	105640240

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]