PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00094.180 | ||||||||
Common Name | JCGZ_11607, LOC105640515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | bHLH | ||||||||
Protein Properties | Length: 92aa MW: 10264.7 Da PI: 4.7531 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.9 | 3.1e-07 | 18 | 58 | 15 | 55 |
HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +i + + +L+ llP+ + + ++ ++s + iL++++ YI +Lq Jcr4S00094.180 18 EIIDLILKLQALLPHiN-QRQDSRVSASKILKETCSYIGKLQ 58 5668899********77.8999******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.636 | 3 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-8 | 17 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-4 | 18 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-8 | 19 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MSSQSSSSSE ASKITKNEII DLILKLQALL PHINQRQDSR VSASKILKET CSYIGKLQRE 60 VDDLSEKLSQ MLDSMDISNV DVESLISILL QQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080238.1 | 9e-57 | transcription factor PRE5 | ||||
TrEMBL | A0A067K4V8 | 2e-55 | A0A067K4V8_JATCU; Uncharacterized protein | ||||
STRING | XP_002511555.1 | 7e-31 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF567 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 2e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105640515 |
Publications ? help Back to Top | |||
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