PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00092.110
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 801aa    MW: 89913.5 Da    PI: 6.7946
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00092.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.18.8e-1663136290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY+eYA+++GFs ++ + +++k++g i  r+f C +eg ++++ ++              C+a+l+v+++ ++kw+vtk+ +eH+H+++
  Jcr4S00092.110  63 FYDEYARRLGFSSKVVHFNRTKTDG-INVREFACGREGLKRRSADS--------------CDAMLRVELKGQNKWVVTKFIKEHSHSMV 136
                     9********************9999.*************9998877..............**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1263136IPR004330FAR1 DNA binding domain
PfamPF105519.5E-21274352IPR018289MULE transposase domain
PROSITE profilePS5096611.078472508IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-10474506IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8483510IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MDVHVIDEEE GMGHRVMAYD GDAEPIEGGE VNNAEHSSAH DEDVVPEPYV GMEFHSEDVV  60
KTFYDEYARR LGFSSKVVHF NRTKTDGINV REFACGREGL KRRSADSCDA MLRVELKGQN  120
KWVVTKFIKE HSHSMVSPSK VHYLRPRRHF AGATKGIAET YQGGGIVPSG VMSVSMDGNH  180
APAEANRGLR NSPAAEANRV SKNAFPLNYT VRPNFRKRTL GRDAQNLLEY FKKMQAENPG  240
FFYAIQLDED NRMANVFWAD ARSRTAYNHF GDAVTLDTNY RVNQYRVPFA PFTGVNHHGQ  300
TILFGCAILL DDSEASFVWL FKTFLTAMND RQPVSIITDQ DMAIQLAVSQ YIFEIPFWLL  360
YLQIQGFDGS FFDGYVNQQT TLPLFFRQYE RALENCFERE LEADFDTICT TPVLRTPSPM  420
EKQAASMYTR KIFAKFQEEL VETFVYTANK IEGDGNISTF RVAKFEDDHK AYIVTLNYPE  480
MKANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSHYILKR WTRNAKTGVG VDERGGELHG  540
QESLALRYNN LCREAIKYAE EGAIAVDTYN VAMSALREGV KRIAAAKKNV AKVPPPRSQA  600
GGIGYDDRKS STSASDTTPL LWPRQDEVTR RFNLNDAGAP AQSVADLNLP RMAPVSLQRD  660
EGAPGNIAVL PCLKSMTWVM ENKNSTSGNR VAVINLKLQD YNKNPSTELE VKFQLSRVTL  720
EPMLRSMAYI SEQLSTPANR VAVINLKLQD TETTSGESDV KFQVSRDTLG ATAEINGRTS  780
ASSSQIVAEP QPEPLSKKPR K
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021653896.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA5BK490.0A5BK49_VITVI; Uncharacterized protein
STRINGcassava4.1_001529m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]