PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00090.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 265aa    MW: 29246.9 Da    PI: 4.8541
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00090.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26038.63.1e-126211449101
         DUF260  49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                    + ++  ++a++s++++++ara+dPv G++++i++l+ q+  l++el+l+k+++
  Jcr4S00090.40  62 IGPSAGKAAARSIIFHSNARASDPVGGCYRIISNLKTQILYLQQELNLVKQQI 114
                    46667789******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.0E-861111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MATFPGQVDD GRTELGFHRQ VDSPIFRGGA AEILTVINLV GHHGFVRTVD KAWILIMMNC  60
EIGPSAGKAA ARSIIFHSNA RASDPVGGCY RIISNLKTQI LYLQQELNLV KQQIAFHQQL  120
SNPPPPTPPP LNVYDPALAV QSMHDSDVYD ASDTDTKIES EVLSSFDLSG HLSVDAKAQP  180
FAVDVSEDVK PFVHGFDERD NTVFLDSSKE VTINRSEKMV EPKGNDKPIQ DDQQEHNIQN  240
ASEVQSTRTN GKNIDLSFVM MLFTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119636e-38AP011963.1 Jatropha curcas DNA, clone: JHL05D22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020536542.11e-143LOB domain-containing protein 27
TrEMBLA0A067KGF71e-141A0A067KGF7_JATCU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.13e-12LOB domain-containing protein 7