PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00089.120 | ||||||||
Common Name | JCGZ_11479, LOC105640746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 184aa MW: 20778.3 Da PI: 9.5234 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.2 | 2.5e-10 | 14 | 51 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +g WT eEd +l+d++k +G+g W+++a+ ++R++ Jcr4S00089.120 14 KGLWTVEEDRILLDYIKIHGKGKWNRVAKLTALKRCGQ 51 678**************************988778775 PP | |||||||
2 | Myb_DNA-binding | 31.8 | 3.3e-10 | 45 | 86 | 15 | 48 |
HHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 15 avkqlGgg.........tWktIartmgkgRtlkqcksrwqkyl 48 a k+ G + W++Ia +++ gRt++q+k++w+++l Jcr4S00089.120 45 ALKRCGQKlqikmdelsKWSLIAGRVP-GRTDNQVKNYWNTHL 86 566677777777778888*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.179 | 9 | 90 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-12 | 12 | 54 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-15 | 13 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.2E-15 | 14 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-11 | 17 | 86 | No hit | No description |
Pfam | PF00249 | 4.2E-8 | 46 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 61 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MQGGSSSSAC AYKKGLWTVE EDRILLDYIK IHGKGKWNRV AKLTALKRCG QKLQIKMDEL 60 SKWSLIAGRV PGRTDNQVKN YWNTHLSRRL GVKKENYKVT TSSTTFSGEL LRNNSDNPSS 120 SNYISNPNNN NNGGTGRNAA EDRSKELVEL AINQEVKMAD LDDNSFLFLN DNYPDLYNPN 180 LLEM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034692 | 0.0 | KM034692.1 Jatropha curcas clone JcMYB072 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080531.1 | 1e-102 | transcription factor WER | ||||
Swissprot | Q9SEI0 | 3e-36 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A067K7V1 | 1e-100 | A0A067K7V1_JATCU; MYB family protein | ||||
STRING | cassava4.1_033883m | 4e-56 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 7e-37 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Entrez Gene | 105640746 |