PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00081.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 825aa MW: 92449.6 Da PI: 6.0434

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00081.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367	2.5e-112	373	741	1	369
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL+ cA+avs++d + a+ lL++++++asp+gd mqRla+ f+ +L+ar+a+s++++y+a+ +++ s +++l+a++lf ++P+ k+s++ Jcr4S00081.20 373 LRTLLTLCAQAVSADDRRSANDLLKQIRQHASPTGDGMQRLAHIFADGLEARMAGSGTQIYEAFMSKPGS---AADVLKAYHLFLAACPFRKLSNF 465 5789**********************************************************999999...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N++I++ +++++++Hi+Df+i +G+QWp+L+q LasR++gpp+lRiTg++ p++g +e++eetg+rL+++A++++vpfef++ +a+++++++ Jcr4S00081.20 466 FSNKTIMKVAQNAKTLHIVDFGILYGFQWPCLIQRLASRAGGPPKLRITGIDLPRPGfrPAERVEETGRRLSNYAKTFNVPFEFKA-IAQKWDTVK 560 *****************************************************99*************************.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +e+L+++++E+l+V + ++l +llde+v +es+r+ vL+l+++++P+v++ + ++++ F +rf eal +ys+lfd+le+++pre er+ +E Jcr4S00081.20 561 IEDLKIDRNEVLVVTCFYRLRNLLDETVVVESPRSIVLNLIRKMNPDVFITGIVNGAYSAPFFITRFREALFHYSTLFDMLETNVPREIPERMLIE 656 ******************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv..lgWkdrpLvs 369 re++++e++nv+acegaer+er et+++W+ r +aGFk++pl+ ++ + ak ++ + + + v+e+s++++ W+ L++ Jcr4S00081.20 657 REIFRWEAMNVIACEGAERIERPETYKQWHTRALRAGFKQLPLDREMFAAAKEKVNALYHKDFVVDEDSQWIMsfNIWMLSCLYT 741 *******************************************************888*******98756798888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.648	347	724	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.7E-110	373	741	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence Send to blast
MVMDQSLNGL YGTVNGLKLN DDTLSVLSSQ NLVNALKLDN NFVNQHYANI PPLPPDLIHS 60 NSVLSLSMSQ DGDSTEDFDF SDVVLKYISE MLMEEDIEGK TCMFQESSAA LQAAEKSLYE 120 LIGEKYPPSP DYELVSHLGQ NHKRPDESHD LNYANYTSSS NNTSGSNLVD TGCNYDLSEY 180 SSLRYASQSS SLSSHSSANS TGTVIDGFVD SPASVISEIF SDSESIMQFK KGFEEASKFL 240 PNGSLFIDLE SNGLFLKDLH DESKDAGAAL GIEEKQESEK NPDLSRGKKN PHPESLNLQG 300 GRSNKQSLIY TESTVSSAYF DTVLLNCSQN DALREALQHG KSKKMQQNEQ TKGSGGGKGR 360 GKKSGGKRNV VDLRTLLTLC AQAVSADDRR SANDLLKQIR QHASPTGDGM QRLAHIFADG 420 LEARMAGSGT QIYEAFMSKP GSAADVLKAY HLFLAACPFR KLSNFFSNKT IMKVAQNAKT 480 LHIVDFGILY GFQWPCLIQR LASRAGGPPK LRITGIDLPR PGFRPAERVE ETGRRLSNYA 540 KTFNVPFEFK AIAQKWDTVK IEDLKIDRNE VLVVTCFYRL RNLLDETVVV ESPRSIVLNL 600 IRKMNPDVFI TGIVNGAYSA PFFITRFREA LFHYSTLFDM LETNVPREIP ERMLIEREIF 660 RWEAMNVIAC EGAERIERPE TYKQWHTRAL RAGFKQLPLD REMFAAAKEK VNALYHKDFV 720 VDEDSQWIMS FNIWMLSCLY TMVDSVMVFL SVNLRKLENG VLAAADCNAI FFRCRFHYGY 780 QLSSAMLSWF LDFVDKFYVG KGSGLLIHNS EMESAEKDTH YCNPS

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence Send to blast

MVMDQSLNGL YGTVNGLKLN DDTLSVLSSQ NLVNALKLDN NFVNQHYANI PPLPPDLIHS  60
NSVLSLSMSQ DGDSTEDFDF SDVVLKYISE MLMEEDIEGK TCMFQESSAA LQAAEKSLYE  120
LIGEKYPPSP DYELVSHLGQ NHKRPDESHD LNYANYTSSS NNTSGSNLVD TGCNYDLSEY  180
SSLRYASQSS SLSSHSSANS TGTVIDGFVD SPASVISEIF SDSESIMQFK KGFEEASKFL  240
PNGSLFIDLE SNGLFLKDLH DESKDAGAAL GIEEKQESEK NPDLSRGKKN PHPESLNLQG  300
GRSNKQSLIY TESTVSSAYF DTVLLNCSQN DALREALQHG KSKKMQQNEQ TKGSGGGKGR  360
GKKSGGKRNV VDLRTLLTLC AQAVSADDRR SANDLLKQIR QHASPTGDGM QRLAHIFADG  420
LEARMAGSGT QIYEAFMSKP GSAADVLKAY HLFLAACPFR KLSNFFSNKT IMKVAQNAKT  480
LHIVDFGILY GFQWPCLIQR LASRAGGPPK LRITGIDLPR PGFRPAERVE ETGRRLSNYA  540
KTFNVPFEFK AIAQKWDTVK IEDLKIDRNE VLVVTCFYRL RNLLDETVVV ESPRSIVLNL  600
IRKMNPDVFI TGIVNGAYSA PFFITRFREA LFHYSTLFDM LETNVPREIP ERMLIEREIF  660
RWEAMNVIAC EGAERIERPE TYKQWHTRAL RAGFKQLPLD REMFAAAKEK VNALYHKDFV  720
VDEDSQWIMS FNIWMLSCLY TMVDSVMVFL SVNLRKLENG VLAAADCNAI FFRCRFHYGY  780
QLSSAMLSWF LDFVDKFYVG KGSGLLIHNS EMESAEKDTH YCNPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-47	380	699	25	333	Protein SCARECROW
5b3h_D	3e-47	380	699	25	333	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405280	0.0	KM405280.1 Jatropha curcas GRAS07 protein (GRAS07) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088996.1	0.0	scarecrow-like protein 9
Refseq	XP_012089004.1	0.0	scarecrow-like protein 9
TrEMBL	A0A067LCG6	0.0	A0A067LCG6_JATCU; GRAS07 protein
STRING	cassava4.1_002303m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-177	GRAS family protein