PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00079.60 | ||||||||
Common Name | JCGZ_04322, LOC105633683 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 27664.7 Da PI: 6.8838 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5e-19 | 37 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r++ gR++k+c++rw + Jcr4S00079.60 37 KGPWSAEEDRILTRLVERHGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.4e-17 | 91 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++ +G++ W+tIar ++ gRt++ +k++w++ Jcr4S00079.60 91 PFSPAEDETILAAHATYGNR-WATIARLLP-GRTDNAVKNHWNST 133 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.328 | 32 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.69E-31 | 34 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-17 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-18 | 37 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-25 | 38 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.84E-15 | 39 | 81 | No hit | No description |
SMART | SM00717 | 2.9E-15 | 88 | 136 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.568 | 89 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-23 | 91 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.40E-12 | 91 | 134 | No hit | No description |
Pfam | PF00249 | 3.2E-14 | 91 | 133 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEAMNVYSTS SSESSSSESS FNGNHTPRNT NKPERIKGPW SAEEDRILTR LVERHGPRNW 60 SLISRYIKGR SGKSCRLRWC NQLSPNVEHR PFSPAEDETI LAAHATYGNR WATIARLLPG 120 RTDNAVKNHW NSTLKRRARE QQHQMIMEGN FDNISNNIVE EVTVAVASRS TSQVVVEEEK 180 EDALTALTLA PPGVGVNGGS CSGDGGLAAE KAAESLPAEF WDVMRDVIAR EVRVIYVVTS 240 INESTASGFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-40 | 33 | 138 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-40 | 33 | 138 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034624 | 0.0 | KM034624.1 Jatropha curcas clone JcMYB004 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012071707.1 | 1e-170 | transcription factor MYB25 | ||||
Swissprot | O23160 | 2e-56 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A067KQI3 | 1e-169 | A0A067KQI3_JATCU; MYB family protein | ||||
STRING | POPTR_0002s13030.1 | 1e-114 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-59 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Entrez Gene | 105633683 |
Publications ? help Back to Top | |||
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