PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00077.70

Common Name

JCGZ_24594, LOC105631288

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 578aa MW: 62680.6 Da PI: 5.0112

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00077.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.7e-18	40	87	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l Jcr4S00077.70 40 KGPWTSAEDAILIEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 87 79******************************************9986 PP
2	Myb_DNA-binding	40.3	7.5e-13	93	157	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....................TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....................kgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++++ +gRt++++k++w++ Jcr4S00077.70 93 KGAFTQEEEQLIIELHAKMGNK-WARMAAHIPefksrlvpmetfisfmytscLGRTDNEIKNYWNT 157 799*****************.***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.548	35	91	IPR017930	Myb domain
SMART	SM00717	3.6E-16	39	89	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-16	40	87	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.3E-25	41	117	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-25	41	94	IPR009057	Homeodomain-like
CDD	cd00167	3.66E-12	42	87	No hit	No description
PROSITE profile	PS51294	15.61	92	163	IPR017930	Myb domain
SMART	SM00717	9.3E-13	92	161	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-12	93	157	IPR001005	SANT/Myb domain
CDD	cd00167	3.72E-8	95	157	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-23	95	162	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0043068	Biological Process	positive regulation of programmed cell death
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0045926	Biological Process	negative regulation of growth
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MSHTTSESDD GVLSKDRADS PLAEEGSCGG SANGGIVLKK GPWTSAEDAI LIEYVKKHGE 60 GNWNAVQKHS GLSRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIIELHAK MGNKWARMAA 120 HIPEFKSRLV PMETFISFMY TSCLGRTDNE IKNYWNTRIK RRQRAGLPLY PPEVSLQALQ 180 ESQRGLNVGG ISTGDKGHQD LMRTNSYEIP DVIFDSLKAN QGISPYVSEL PDISASSILV 240 KGLGSSQYGS FMSPSVHRQK RFRESTTLIP GYSGGVKTEF PLFDQFQDNS CDKVAQSFGL 300 SFPFDPDPTN KNPQSFCDNQ GGHTLANGDF SASKPNSGPL KMELPSLQYP ENDLGSWGTS 360 PPHLLETVDT FIQSPPTGAV ESSPRNSGLL DALLHEAKTL SSAKNHSSDK SSNSSTVTPG 420 ELAESSALNI CGAEWEDYGD PLSPLGHTAT SLFSDCTPIS ASGSSLDEPP PTETFTGCNV 480 KSELVDQAWS PERERETTNR LDITRPDALL ASDWLGQGSG YVKEQVIMAD NIATLLGDDL 540 SSDYKQISAG ASTSNQGWGL GSCAWNNMPA VCQMSELP

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MSHTTSESDD GVLSKDRADS PLAEEGSCGG SANGGIVLKK GPWTSAEDAI LIEYVKKHGE  60
GNWNAVQKHS GLSRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIIELHAK MGNKWARMAA  120
HIPEFKSRLV PMETFISFMY TSCLGRTDNE IKNYWNTRIK RRQRAGLPLY PPEVSLQALQ  180
ESQRGLNVGG ISTGDKGHQD LMRTNSYEIP DVIFDSLKAN QGISPYVSEL PDISASSILV  240
KGLGSSQYGS FMSPSVHRQK RFRESTTLIP GYSGGVKTEF PLFDQFQDNS CDKVAQSFGL  300
SFPFDPDPTN KNPQSFCDNQ GGHTLANGDF SASKPNSGPL KMELPSLQYP ENDLGSWGTS  360
PPHLLETVDT FIQSPPTGAV ESSPRNSGLL DALLHEAKTL SSAKNHSSDK SSNSSTVTPG  420
ELAESSALNI CGAEWEDYGD PLSPLGHTAT SLFSDCTPIS ASGSSLDEPP PTETFTGCNV  480
KSELVDQAWS PERERETTNR LDITRPDALL ASDWLGQGSG YVKEQVIMAD NIATLLGDDL  540
SSDYKQISAG ASTSNQGWGL GSCAWNNMPA VCQMSELP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-28	38	162	5	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00490	DAP	Transfer from AT5G06100	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034648	0.0	KM034648.1 Jatropha curcas clone JcMYB028 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068750.1	0.0	transcription factor GAMYB
Refseq	XP_012068751.1	0.0	transcription factor GAMYB
Refseq	XP_020534006.1	0.0	transcription factor GAMYB
TrEMBL	A0A067L7W6	0.0	A0A067L7W6_JATCU; MYB family protein
STRING	XP_002525574.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2047	34	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-143	myb domain protein 33

Link Out ? help Back to Top
Entrez Gene	105631288

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]