PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00070.110
Common NameJCGZ_12574, LOC105639879
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 661aa    MW: 73334.1 Da    PI: 6.959
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00070.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-12322378155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Jcr4S00070.110 322 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 378
                     78*******************87776664446655.77******************98 PP
2AP245.22.3e-14423472355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Jcr4S00070.110 423 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 472
                     9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-18322386No hitNo description
SuperFamilySSF541715.23E-14322387IPR016177DNA-binding domain
PfamPF008471.3E-9322378IPR001471AP2/ERF domain
PROSITE profilePS5103217.056323386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-12323387IPR001471AP2/ERF domain
SMARTSM003806.1E-22323392IPR001471AP2/ERF domain
PRINTSPR003673.9E-6324335IPR001471AP2/ERF domain
CDDcd000186.43E-25421482No hitNo description
SuperFamilySSF541711.31E-17421481IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-18422480IPR001471AP2/ERF domain
SMARTSM003808.3E-34422486IPR001471AP2/ERF domain
PROSITE profilePS5103219.282422480IPR001471AP2/ERF domain
PfamPF008471.1E-9423472IPR001471AP2/ERF domain
PRINTSPR003673.9E-6462482IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MKSINNDDDN NSNTHWLGFS LSPLQMKMEI PSTSAASVCA SASSISVPTA IPASFFQSNI  60
NYGSYCAVEG ENGGLYSSLP VMPLKSDGSL CIMEALTRSQ TQATLAATTS TPKLEDFFGG  120
ATMGTHHYET TDREAMPLSL DSMYYNHNEP NHQNCLSHLH QNPRHQNHQI QVQHYPYYNN  180
NTNFRSYDML IGEEPKENQV SDSNVQIQNL GDDTLSGMRN WVSRNYSNNQ HAMEQQKMIS  240
CMGDSSGGES GAISAMAYGD LQSLSLSMSP GSQSSCVTGS QQISPAVTDC VAIETKKRGP  300
DKAEQKQTVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ SRKGRQGGYD  360
MEEKAARAYD LAALKYWGPS THINFQLENY QKELEEMKNM TRQEYVAHLR RKSSGFSRGA  420
SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIKF RGVNAVTNFD  480
ITRYDVERIM ASNTLVSGEV ARRNKDAGPV NEATNHSTHN SFSEVIPVQK NNQSESDWKM  540
ALYQSDQKAS NVIDNFKTQI FENVTGIDTL SSIHNQQVEE SGKIGTHLSN ASSLVTSLSS  600
SREGSPDRAS MPMLFAMPPS ATSKLFSNPS SNEISWIPTA AQLRSAVSLP HMPVFAAWTD  660
A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079449.10.0AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A067KAR70.0A0A067KAR7_JATCU; Uncharacterized protein
STRINGcassava4.1_003308m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-147AP2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]