PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00065.230
Common NameJCGZ_20794, WRKY44
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 276aa    MW: 30797.3 Da    PI: 10.3258
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00065.230genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.35.4e-22212263359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++p      +++gCp++k+ver+ +dp+++ +tYeg+H h+
  Jcr4S00065.230 212 DDYTWRKYGQKPIKGSPYPS-----SMRGCPARKHVERCLQDPSMLLVTYEGDHSHS 263
                     99***************997.....589****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.9E-15168208IPR018872Zn-cluster domain
PROSITE profilePS5081121.448205265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-22205264IPR003657WRKY domain
SuperFamilySSF1182906.02E-19208263IPR003657WRKY domain
SMARTSM007743.0E-25210264IPR003657WRKY domain
PfamPF031065.1E-17212262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKEGAGVCAS VNEAAQSSFR QAHHLFSCIS DHKNQKRSIQ EVSLIAQGAI KEFNNLLTLL  60
DESTKSNPKR IRKGPLPLFQ YDINPLVFMD NSLSQQPQKV KQLFPFHSLH QSTNSMMIPT  120
NSSKNRSLKP KSSSFLSLEY GNVVHKPFVL HCSSSETSAF SKSKNGRKSE EAGTRCLAST  180
GGCHCSKRRK LRIKKIVQVP ALSGKLADIP PDDYTWRKYG QKPIKGSPYP SSMRGCPARK  240
HVERCLQDPS MLLVTYEGDH SHSNLTFQSP NIILQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-162062621071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852960.0KC485296.1 Jatropha curcas WRKY transcription factor 44 (WRKY44) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087245.10.0probable WRKY transcription factor 21
SwissprotO043361e-44WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLS5CKH30.0S5CKH3_JATCU; WRKY transcription factor 44
STRINGcassava4.1_032017m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-44WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]