PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00060.50
Common NameJCGZ_11360, LOC105640259
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 489aa    MW: 54528.9 Da    PI: 5.6861
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00060.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.17e-14150172426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    e C+++++tGtCk+G++CkF+H+
  Jcr4S00060.50 150 EDCSYYMKTGTCKFGSNCKFNHP 172
                    89********************9 PP
2zf-CCCH31.82.4e-10195220227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ +C++++rtG CkyG  C+++H++
  Jcr4S00060.50 195 GQTECKYYLRTGGCKYGKACRYNHSR 220
                    6789********************95 PP
3zf-CCCH39.87.7e-13248272226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ++++C++++r+G CkyG++C+F+H+
  Jcr4S00060.50 248 GEKECPYYMRNGSCKYGANCRFNHP 272
                    7899********************9 PP
4zf-CCCH28.52.6e-09379405127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+++++tG Ck+ ++Ck++H++
  Jcr4S00060.50 379 PGQPECSYYMKTGDCKFKSNCKYHHPK 405
                    5789*********************96 PP
5zf-CCCH34.53.5e-11426450226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C+++ r+G+Ck+G+ CkF H+
  Jcr4S00060.50 426 GQSVCSYYKRYGICKFGPACKFDHS 450
                    7789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-6146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474147174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6148174IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-11150172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5152171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577193221IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5193220IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8195220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6196221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5199220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.324246274IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7246273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6248273IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10248272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5252271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108378406IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4378405IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6380405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5382408IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342424452IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5424451IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-9426450IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6427452IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5429451IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEFSETSNLV STNALIGFQS PTYASNADPD TKPSDQTVEL RKEGRKKLYL KDGGDAETKP  60
DKVTAVVVEK VQEQLEKQLH LKEDEEDKHS IEWNQDDDFK SADSNDGEEH NMDDKEDNGD  120
DKFSDEMERK DEGSNGXXXX XXXXXXPEAE DCSYYMKTGT CKFGSNCKFN HPVRRKNQVT  180
KDKVKEREEP TERPGQTECK YYLRTGGCKY GKACRYNHSR AKPPVLPAKT TVFPALDLNF  240
LGLPIRPGEK ECPYYMRNGS CKYGANCRFN HPDPTAVGGN DAPYSNGGSA SLQQSSQPSV  300
ASWSSPRGLN ETAPFVPIMF PPTQGVPSQS PEWNGYQAPL YPPERSLHPP PAYVISPATD  360
TNVYAHQLQM PVDEFPERPG QPECSYYMKT GDCKFKSNCK YHHPKNQISK SPPCELSDKG  420
LPLRPGQSVC SYYKRYGICK FGPACKFDHS IQPASTTGLA DDQGTLYGDS MAKEEARMTE  480
TGNGSDKSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079920.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ9STM41e-136C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A067KGL00.0A0A067KGL0_JATCU; Uncharacterized protein
STRINGcassava4.1_006776m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-132C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]