PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00057.310 | ||||||||
Common Name | JCGZ_14516 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21348.3 Da PI: 8.6723 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.5 | 1.7e-36 | 8 | 101 | 1 | 93 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq e + + Jcr4S00057.310 8 PCGACKFLRRKCLKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVGHLFALQQQAELAYIQ 101 7***********************9989**********************************************************98866444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.119 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-35 | 8 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSSNGGGPCG ACKFLRRKCL KGCIFAPYFD SDQGTAHFAA VHKVFGASNA SKLLLRIPAH 60 KRLDAVVTLC YEALARVRDP VYGCVGHLFA LQQQAELAYI QARLSTLQHL PLPHQSPSQT 120 TSTMASNSNM SMNYDQQQVL QSQYLSTELA SICNKNPLDP ELQADDLQSL ARDFVSKYLP 180 GVRFKPPSSH QSNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 2 | 94 | 5 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 2 | 94 | 5 | 96 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083562.1 | 1e-140 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 5e-66 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A067K913 | 1e-141 | A0A067K913_JATCU; Uncharacterized protein | ||||
STRING | XP_002511729.1 | 1e-97 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-64 | LOB domain-containing protein 31 |
Publications ? help Back to Top | |||
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